Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_P12
(611 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17) 31 0.97
SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0) 31 0.97
SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021) 29 3.0
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_25423| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_18971| Best HMM Match : PWP2 (HMM E-Value=4) 28 6.9
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_15918| Best HMM Match : Toxin_23 (HMM E-Value=2.3) 27 9.1
>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
Length = 1420
Score = 30.7 bits (66), Expect = 0.97
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 226 QSNEQSYKDLVMPLITQLVDNLKSKQITD 312
+ N+Q Y+DL +P+ + L N++ KQ+ +
Sbjct: 293 KGNKQQYRDLEIPISSDLAANMREKQVAE 321
>SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1184
Score = 30.7 bits (66), Expect = 0.97
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 113 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWM 3
GS S + S PLA + +CK A VP+T W+
Sbjct: 449 GSGKTSLLLTISGELPLASGELYCKGRVAYVPETPWL 485
>SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 2/109 (1%)
Frame = +1
Query: 175 LKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKYPY 354
++V D+V FET +NE + + P V L K D K GHT
Sbjct: 1 MEVEKSPTDVVQEFETLAANEVKKERRIAPGEAHFVWKLIQKHGEDYKAERLGHTCVLMS 60
Query: 355 PILYD-TDLKLKSSKLHFDDXERYERMP-FVKTGCDTFDKYEKNVIDFM 495
Y + L S + D Y+ P +K C+ F + ++ +++
Sbjct: 61 FAGYTFSHAPLYSKAMSKDKENYYQHTPKQLKRKCEAFLRSSQDFSEYL 109
>SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 364 YDTDLKLKSSKLHFDDXERYERMPFVKTGCDTFDKYEKNVID 489
YD + K K+H+DD E Y + D +D Y+ N D
Sbjct: 636 YDDNEGSKMVKVHWDDYENYVNVNVNDDDYDDYDDYDDNDYD 677
>SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021)
Length = 567
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/69 (34%), Positives = 29/69 (42%)
Frame = -3
Query: 222 SFEGDDNICLLVWHFELINVSDGVRLVRVGAAHASVRQHSRQQSREGQRRVSSRQVTGLV 43
SF DD+ C + W DG V A+ + R SREG SS +V GL
Sbjct: 190 SFPWDDHHCRISWR------GDGQYFVVSAIEPATDARKLRVWSREGVLMTSSEEVDGLE 243
Query: 42 QVLSGVCSG 16
Q L SG
Sbjct: 244 QSLCWKPSG 252
>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1252
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 265 LITQLVDNLKSKQITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDD 411
+++ LV +++ KQ+ D + AG Y Y +L T L L + K+H +D
Sbjct: 221 ILSVLVKDVQEKQLFDKERMRAG----YEYEVLGGTHLMLATQKMHAED 265
>SB_25423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 295 SKQITDIKI-YLAGHTSKYPYPILYDTDLKLKSSKLHFDDXERYERMPFV 441
S+QIT + LA +SK+P+P+L D L++ S D + P++
Sbjct: 2 SEQITCFLLPVLATPSSKFPFPVLVDAVLRMLKSMSSTSDGAIHGASPWL 51
>SB_18971| Best HMM Match : PWP2 (HMM E-Value=4)
Length = 400
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +1
Query: 70 YAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADIVVSFETTQSNEQSYK 249
Y AL +T D C+ + D AIGD ++VP K+ DI S N +
Sbjct: 20 YKALTVTHKQSFKYNDTCLNYSSKDVVMAIGDA--IEVPLKEEDISTSHPLPSYNPNAPP 77
Query: 250 DLVMPLI 270
+++ +
Sbjct: 78 KIIVKFV 84
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 27.5 bits (58), Expect = 9.1
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Frame = +2
Query: 347 IPTLSYTILI*N*RAPNYISTTKSATSVCLLSKLD---------VIHSTNMKRTLST 490
IP++S +IL N +TT+ ATSV LLS L+ V+ T MKRT T
Sbjct: 756 IPSISTSILPYNTTVIATPNTTRIATSVILLSSLNDTIRTRSTSVVFETTMKRTQIT 812
>SB_15918| Best HMM Match : Toxin_23 (HMM E-Value=2.3)
Length = 227
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 337 TSKYPYPILYDTDLKLKSSKLH 402
T YP+P LYDT L L++ H
Sbjct: 203 TEIYPHPSLYDTQLNLQTKISH 224
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,285,491
Number of Sequences: 59808
Number of extensions: 341006
Number of successful extensions: 882
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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