Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P12
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR ...    29   2.4  
At3g48470.1 68416.m05291 expressed protein                             28   4.2  
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa...    27   7.4  

>At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 884

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 151 HAIGDVYQLKVPNKQADIVVSFETTQS-NEQSYKDLVMPLITQLVDNLKSKQITDIKIY 324
           + IG+    K   ++ D  V   TT + N  + K+ ++P++    DNL+S+ +    +Y
Sbjct: 355 NVIGETMACKKTTQEWDRAVDVSTTYAANFGAVKERILPILKYSYDNLESESVKTCFLY 413


>At3g48470.1 68416.m05291 expressed protein
          Length = 1017

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +1

Query: 124 VRCTDADKPHAIGDVYQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKS 297
           VR +  +  H  GD+ +  V  + +DI +  E   + E+  + L+  L+T+  ++L++
Sbjct: 650 VRASPDELTHIAGDLARTLVQVRCSDIAIEGEEDSAEEKRQRALIALLVTRPFESLET 707


>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P79263
           Inter-alpha-trypsin inhibitor heavy chain H4 precursor
           {Sus scrofa}; contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 641

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 143 SASVQRTQASG-STAGSSPVRASAAYPLAR 57
           S S QR  A G ST G SPV+A    P+AR
Sbjct: 588 SHSAQRATARGDSTQGFSPVQAYQTSPMAR 617


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,389,369
Number of Sequences: 28952
Number of extensions: 230389
Number of successful extensions: 637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)