Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_P11
(288 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 27 0.72
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 0.95
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 2.2
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 2.9
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 2.9
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 24 3.8
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 24 3.8
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 23 6.7
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 23 6.7
SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy... 23 6.7
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 23 8.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 23 8.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 23 8.8
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 26.6 bits (56), Expect = 0.72
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 132 IDFYKQKGEHFTFEILYYGK 191
+D K E+F FEI YYGK
Sbjct: 305 VDLAKGMVENFIFEITYYGK 324
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 0.95
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 118 FSSITLIFINKRVNILHLRFYIMVKIIFLPLC 213
FSS+T + +NKR I H I ++ L +C
Sbjct: 849 FSSLTSLLMNKRNAISHTYMQIQEQLFQLDIC 880
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.0 bits (52), Expect = 2.2
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 120 KSFQVLFPLIRE--KAFRILFSSFLNNTYSIQYHCILWI 10
K+ +VLFP+ + K L + NNT+ Y +LW+
Sbjct: 101 KAVRVLFPVGVQYIKELYTLLNESSNNTWHFHYIVLLWL 139
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 2.9
Identities = 10/46 (21%), Positives = 24/46 (52%)
Frame = -1
Query: 162 NVHPFVYKNQCNATKSFQVLFPLIREKAFRILFSSFLNNTYSIQYH 25
+V +Y + + + PL+ ++ ++ L S+LN++Y +H
Sbjct: 778 SVQTVLYHSLLTLIWAISPITPLLAQEIWQSLPDSYLNSSYQTPFH 823
>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 430
Score = 24.6 bits (51), Expect = 2.9
Identities = 10/34 (29%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 133 LIFINKRVNILHLRFYIMVKIIF-LPLCYIYLPR 231
L+++NK+++ILH + + + + PL + +PR
Sbjct: 8 LLWLNKQLSILHYLCLVFLAVYYAYPLLFGIMPR 41
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 24.2 bits (50), Expect = 3.8
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = -1
Query: 81 AFRILFSSFLNNTYSIQYHCILWI 10
A S+++ + Y ++ CI+WI
Sbjct: 119 ALASFISAYIRSRYGYRFFCIIWI 142
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 3.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 199 FLPLCYIYLPRTCYPKI*YA 258
F+P+ +L TCYP + +A
Sbjct: 427 FIPIALFWLGWTCYPSVHWA 446
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 23.4 bits (48), Expect = 6.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 114 FQVLFPLIREKAFRILFSSFLNNTYSI 34
FQ FPL + A + S+LN T +I
Sbjct: 284 FQPAFPLYEDPAIQKFIISYLNATNTI 310
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 23.4 bits (48), Expect = 6.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 132 IDFYKQKGEHFTFEILYYGKN 194
+DF+ Q G H++ I YG++
Sbjct: 120 VDFHSQGGIHYSTRIPKYGRD 140
>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 228
Score = 23.4 bits (48), Expect = 6.7
Identities = 7/30 (23%), Positives = 18/30 (60%)
Frame = -2
Query: 146 FIKINVMLLNPSKFYFR*SEKKLFVFCFHH 57
F ++M++ P ++ + ++ +FCFH+
Sbjct: 66 FFDCHLMVIEPERYIDQLADAGASLFCFHY 95
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 23.0 bits (47), Expect = 8.8
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +1
Query: 172 RFYIMVKIIFLPLCYIYLPRTCYPK 246
+++ V++++LP+ Y+Y R PK
Sbjct: 225 KWWCHVRLVYLPMGYMYGERLKCPK 249
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 23.0 bits (47), Expect = 8.8
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +1
Query: 139 FINKRVNILHLRFYIMVKIIFLPLCYI 219
F+++ ++IL LR+Y++V+ + + Y+
Sbjct: 928 FLSEPLSILALRYYVLVRPLEALMKYV 954
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 23.0 bits (47), Expect = 8.8
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +1
Query: 139 FINKRVNILHLRFYIMVKIIFLPLCYI 219
F+++ ++IL LR+Y++V+ + + Y+
Sbjct: 928 FLSEPLSILALRYYVLVRPLEALMKYV 954
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,192,870
Number of Sequences: 5004
Number of extensions: 22193
Number of successful extensions: 52
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -