Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P11
         (288 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0491 - 22680011-22680125,22680210-22680307,22680392-226804...    30   0.26 
06_03_0498 - 21432958-21434245,21434579-21435310,21435502-214357...    27   3.2  
05_02_0004 - 5528713-5528718,5529039-5529390,5529802-5530339,553...    27   3.2  
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    26   5.6  
02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213...    25   7.4  
11_03_0120 - 10255303-10255518,10256490-10256582,10256774-102568...    25   9.8  

>01_05_0491 -
           22680011-22680125,22680210-22680307,22680392-22680472,
           22680564-22680677,22680757-22680823,22680947-22681017,
           22681099-22681236,22681324-22681530,22681630-22681773,
           22681856-22682017,22682117-22682173,22682256-22682348,
           22682425-22682542,22682678-22682817,22683031-22683590,
           22683703-22683805
          Length = 755

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 173 LKCKMFTLLFIKINVMLLNPSKFYFR*SEKKLFVFCF 63
           L CK+FT LF  INV L N +  Y +    +L  +CF
Sbjct: 579 LICKLFTQLFSFINVQLFNSNGEYVKAGLDELEHWCF 615


>06_03_0498 -
           21432958-21434245,21434579-21435310,21435502-21435788,
           21435955-21436026,21436130-21436264,21436887-21436925
          Length = 850

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 87  EKAFRILFSSFL--NNTYSIQYHCILWIVSK 1
           E  F  L+  F+  NN Y+++Y  ++W+  K
Sbjct: 450 EAEFEYLWKDFIRRNNLYNVRYFQLIWVTRK 480


>05_02_0004 -
           5528713-5528718,5529039-5529390,5529802-5530339,
           5530354-5531731,5531895-5532015,5534226-5534545
          Length = 904

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 87  EKAFRILFSSFL--NNTYSIQYHCILWIVSK 1
           E  F  L+  F+  NN Y+++Y  ++W+  K
Sbjct: 685 EAEFEYLWKDFIRRNNLYNVRYFQLMWVTRK 715


>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 153 PFVYKNQCNATKSFQVLFPLIREKAFRILFSSFLNNTYSIQYHCILWI 10
           PF Y +QC  +K   VL  L  EKAF  +  S + +        + WI
Sbjct: 437 PFEYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMGFPLKWI 484


>02_01_0317 -
           2128660-2128776,2129281-2129364,2129463-2129543,
           2130230-2130407,2130530-2130673,2130780-2130826,
           2131149-2131205,2131989-2132087,2132301-2132423,
           2132514-2132636,2132859-2132972,2133612-2133800,
           2134408-2134574,2134707-2134791,2134891-2135085,
           2135162-2135251,2135418-2135603,2135885-2135959,
           2136757-2136957
          Length = 784

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 172 RFYIMVKIIFLPLCYIYLPRTCYP 243
           R +   ++++LP+CYIY  R   P
Sbjct: 279 RMWCHCRMVYLPMCYIYGKRFVGP 302


>11_03_0120 -
           10255303-10255518,10256490-10256582,10256774-10256872,
           10258145-10258264,10258345-10258467,10259933-10260046,
           10261173-10261361,10263100-10263266,10263829-10263913,
           10264176-10264370,10266251-10266436,10266575-10266614,
           10267899-10267966
          Length = 564

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 172 RFYIMVKIIFLPLCYIYLPRTCYP 243
           RF+   +++++P+ YIY  R   P
Sbjct: 193 RFWCFCRMVYMPMSYIYAKRFIGP 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,209,812
Number of Sequences: 37544
Number of extensions: 99376
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)