Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P11
         (288 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10302| Best HMM Match : VDE (HMM E-Value=4.4)                       27   1.9  
SB_41639| Best HMM Match : Retrotrans_gag (HMM E-Value=6.6)            27   2.5  
SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.4  
SB_5550| Best HMM Match : BofA (HMM E-Value=3.3)                       26   4.4  
SB_19212| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.7  
SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)               25   7.7  
SB_208| Best HMM Match : zf-C2H2 (HMM E-Value=1.7)                     25   7.7  

>SB_10302| Best HMM Match : VDE (HMM E-Value=4.4)
          Length = 578

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 118 FSSITLIFINKRVNILHLRF-YIMVKIIFLPLCYIYLPRTC 237
           F    ++F+  RV  +  R  ++  +++F+P C +++P TC
Sbjct: 237 FVPTCVVFVPTRVVFVPTRVVFVPTRVVFVPTCVVFVP-TC 276


>SB_41639| Best HMM Match : Retrotrans_gag (HMM E-Value=6.6)
          Length = 324

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +3

Query: 30  IELNMCYLEMMKTKYE-KLFL*LTEIKLGRI**HYIDFYKQKGEHFTFEILYYGKNNIFT 206
           IE   CY E+MKT+ E ++ L L  +  GR+  HY      + E   F  L   + ++  
Sbjct: 104 IERLECYFELMKTRTESRVPLLLCGLAAGRLIEHYGYARNTRLERAKFRALRRDEESVAD 163

Query: 207 IMLHLFA*NLLP*NIIRYYR 266
             + L        N +RYYR
Sbjct: 164 FEVRLR-------NAVRYYR 176


>SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 56  NDENKIRKAFSLINGNKTWKD 118
           ND NKIRK+ +L    K W D
Sbjct: 509 NDYNKIRKSLNLQGEEKPWVD 529


>SB_5550| Best HMM Match : BofA (HMM E-Value=3.3)
          Length = 203

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 114 FQVLFPLIREKAFRILFSSFLNNTYSIQYHCILWIV 7
           F+++F L+   AFR++F   L   + + +  + W V
Sbjct: 79  FRLVFRLVFRLAFRLVFGLVLRLVFGLVFGLVFWPV 114


>SB_19212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +1

Query: 112 EGFSSITLIFINKRVNILHLRFYIMVKIIFLPLCYIYLPRTCYPKI*YAIIDYVL 276
           E ++S  LI ++  +  L +   ++  ++F+ LC + LP    P+I   II+ ++
Sbjct: 211 ENYNSYVLI-LDIIIGYLIMFAILVAVVLFISLCVVILPSLLDPEIINIIINILI 264


>SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 563

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 126 HYIDFYKQKGEH-FTFEILYYGKNNIF 203
           H +D  K+ G   F  E  YYGK+N F
Sbjct: 169 HIVDIAKEYGALLFAVEHRYYGKSNFF 195


>SB_208| Best HMM Match : zf-C2H2 (HMM E-Value=1.7)
          Length = 836

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 195 YFYHNIKSQM*NVHPFVYKNQCNATK 118
           Y +H+I+     +HP + +N C+A +
Sbjct: 800 YTHHDIRENRPAIHPVLQENGCSAVR 825


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,907,025
Number of Sequences: 59808
Number of extensions: 134606
Number of successful extensions: 238
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 315872425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)