Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P11
         (288 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15700.1 68416.m01990 disease resistance protein, putative si...    26   4.8  
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi...    25   8.4  
At1g18920.1 68414.m02355 hypothetical protein contains Pfam prof...    25   8.4  

>At3g15700.1 68416.m01990 disease resistance protein, putative
           similar to NBS/LRR disease resistance protein
           [Arabidopsis thaliana] gi|3309619|gb|AAC26125; contains
           Pfam profile: PF00931 NB-ARC domain
          Length = 375

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 109 LEGFSSITLIFINKRVNILHLRFYIMVKIIFL 204
           L GF  +  +F++K VN+  ++  I  KI FL
Sbjct: 189 LNGFDFVIWVFVSKNVNLEKIQDTIREKIGFL 220


>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 991

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 132 IDFYKQKGEHFTFEILYYGKNNI 200
           ID Y +KG     E ++YGK N+
Sbjct: 486 IDVYAEKGLWVEAETVFYGKRNM 508


>At1g18920.1 68414.m02355 hypothetical protein contains Pfam profile
           PF03794: Domain of Unknown function
          Length = 980

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 33  ELNMCYLEMMKTKYEKLFL*LTEI 104
           ELNM  L+    KYEKL + L +I
Sbjct: 708 ELNMLVLDHKNVKYEKLCMSLQDI 731


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,664,150
Number of Sequences: 28952
Number of extensions: 98278
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 261894672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)