Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P09
         (197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    36   6e-04
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    35   0.001
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   1.8  
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    25   1.8  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    24   3.2  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    23   5.6  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    23   7.4  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      23   7.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    22   9.7  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 36.3 bits (80), Expect = 6e-04
 Identities = 13/37 (35%), Positives = 27/37 (72%)
 Frame = +3

Query: 87  GGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVY 197
           G  ++L  ++ED+ ++LAA  H+G++N+  +M+ YV+
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVW 41


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 35.1 bits (77), Expect = 0.001
 Identities = 12/33 (36%), Positives = 25/33 (75%)
 Frame = +3

Query: 99  LLALSEEDVTKMLAATTHLGAENVNFQMETYVY 197
           +L  +++D+  +LAA +H+G++N+  +ME YV+
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVW 42


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 44  MPPSCRIPAASGDP 3
           +P +C++PAA G P
Sbjct: 576 LPKACKVPAAQGSP 589


>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 82  IVAFVRVTTKRV*CHPRAEFLQPRGIH 2
           IV F+R+   R+ C    +F+  +G+H
Sbjct: 245 IVKFIRLNVYRLSCLSTDDFINGKGVH 271


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 9   PRGCRNSARGW-HYTRLVVTLTNATMSGGLDL 101
           P   R +A  W H+ +LVV     T  GG+DL
Sbjct: 633 PSHFRQNALFWAHHEKLVVVDDAITFIGGIDL 664


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 72  NATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQME 185
           N+T+SG  D  +++   +        +L A+N N Q E
Sbjct: 204 NSTVSGSEDSASITTPSLRMREDVVAYLRADNKNLQYE 241


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 156 PNGWSPQ 136
           PNGWSPQ
Sbjct: 605 PNGWSPQ 611


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 75  ATMSGGLDLLALSEEDVT 128
           +T+SG +D++ + +ED T
Sbjct: 21  STLSGAIDVIVVEQEDKT 38


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 108 LSEEDVTKMLAATTHLGAENV-NFQMETY 191
           LSEED++K    TT  G EN  + Q E Y
Sbjct: 151 LSEEDLSKEDLETTLKGDENYSSSQKEIY 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 843,140
Number of Sequences: 5004
Number of extensions: 12262
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)