Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_P09
(197 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 46 6e-06
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 44 2e-05
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 26 3.7
02_02_0625 - 12339623-12339707,12339938-12340062,12340844-123409... 26 3.7
05_03_0331 + 12488005-12488454,12488561-12489505 26 4.8
04_03_0360 - 14906919-14907764 25 6.4
04_03_0330 - 14496906-14497751 25 6.4
03_05_0299 + 22887603-22887797,22887891-22887986,22888089-228881... 25 6.4
08_02_0920 - 22633777-22633791,22635103-22635399,22635491-226356... 25 8.5
03_06_0295 - 32897545-32897805,32897859-32898714,32898843-32899096 25 8.5
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 45.6 bits (103), Expect = 6e-06
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3
Query: 75 ATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVY 197
A G L+ +E+DV MLAA HLG +N +FQME YVY
Sbjct: 3 AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVY 43
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 43.6 bits (98), Expect = 2e-05
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = +3
Query: 87 GGLDLLALS--EEDVTKMLAATTHLGAENVNFQMETYVY 197
GG ALS E+D+ MLAA HLG +N +FQME YVY
Sbjct: 5 GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVY 43
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 42 HYTRLVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETY 191
HY + VT +G + L+ L +ED+ K L+A H E + MET+
Sbjct: 252 HYIKSQVTAA----TGAIALMQL-QEDLKKHLSAECHYTEEELEAYMETH 296
>02_02_0625 -
12339623-12339707,12339938-12340062,12340844-12340996,
12342037-12342102,12343374-12343443,12343523-12343593,
12343664-12343795,12344042-12344130,12344189-12344270,
12344743-12344811,12345641-12345730,12345856-12345918,
12346158-12346217
Length = 384
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 182 HLEINIFRSQMGGRRKHLSHIFLAER 105
HL ++ ++GG +HL H+F + R
Sbjct: 47 HLRSDVGCGEIGGNNRHLDHLFDSSR 72
>05_03_0331 + 12488005-12488454,12488561-12489505
Length = 464
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 148 PIWERKMLISRWRRT 192
P+WER++L +RW T
Sbjct: 197 PVWEREVLTARWPPT 211
>04_03_0360 - 14906919-14907764
Length = 281
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 54 LVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAE 164
L+++ TN T GG ++A + VT++LAAT E
Sbjct: 153 LLISGTNIT--GGAGVVAAYDRAVTELLAATVRYAVE 187
>04_03_0330 - 14496906-14497751
Length = 281
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 54 LVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAE 164
L+++ TN T GG ++A + VT++LAAT E
Sbjct: 153 LLISGTNIT--GGAGVVAAYDRAVTELLAATVRYAVE 187
>03_05_0299 +
22887603-22887797,22887891-22887986,22888089-22888172,
22888573-22888733,22889458-22889575,22889914-22890049,
22890351-22890529,22890690-22890929
Length = 402
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 133 CLRRPPIWERKMLISRWR 186
C RRP IW R+ + SR R
Sbjct: 22 CSRRPEIWHRRRIGSRIR 39
>08_02_0920 -
22633777-22633791,22635103-22635399,22635491-22635646,
22636118-22636203,22637969-22638791
Length = 458
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 137 KHLSHIFLAERKQV*SSRHRCVCKSYD*TRIMPPSCRIPAASGD 6
+HL+ IF + + H + + T++ SCR+PAA D
Sbjct: 121 EHLALIFSEADNFLFHTLHAAIFSCRELTKLELGSCRLPAAPSD 164
>03_06_0295 - 32897545-32897805,32897859-32898714,32898843-32899096
Length = 456
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = +2
Query: 8 PPRLQEFGTRVALYAFSRNSYKRNDVGRIRLACAQRGRCD*DACGDHPFG 157
PP LQ FG+ L R V R+ AC Q +C FG
Sbjct: 158 PPPLQGFGSLATLVLQGLPCSTRPAVYRVVAACPQLQSLHLSSCRSRKFG 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,507,421
Number of Sequences: 37544
Number of extensions: 109675
Number of successful extensions: 219
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 14,793,348
effective HSP length: 45
effective length of database: 13,103,868
effective search space used: 262077360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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