Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P09
         (197 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)                61   2e-10
SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)                    26   5.5  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  
SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 28/39 (71%), Positives = 30/39 (76%)
 Frame = +3

Query: 81  MSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVY 197
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVY
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVY 39


>SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)
          Length = 674

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 29  GTRVALYAFSRNSYKRNDVGRIRLACAQRGRCD*DACGDH 148
           G R   + F +  YK ND G+     AQR   D   CG++
Sbjct: 338 GRRDQKWTFCQRYYKCNDCGKSVDKSAQREDGDEHVCGEY 377


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 11  PRLQEFGTRVALYAFSRNSYKRNDVGRIRLAC 106
           P L +F    ALYA++   +KR+D   +R+ C
Sbjct: 226 PELAKF-QGPALYAYNNARFKRDDWNGLRMLC 256


>SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2905

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 18   CRNSARGWHYTRLVVTLTNATMSGGLDLLALSEEDVTKMLAATTH 152
            CR  AR W   RL + L+ +    G+  L  +   VT  + +  H
Sbjct: 2332 CRLDARLWLTCRLALALSLSGEDSGMGKLGGTTRSVTSFIGSCDH 2376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,890,768
Number of Sequences: 59808
Number of extensions: 114934
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 16,821,457
effective HSP length: 44
effective length of database: 14,189,905
effective search space used: 297988005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)