Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P09
         (197 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    53   3e-08
U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical p...    27   1.4  
AF003142-8|AAB54185.2|  205|Caenorhabditis elegans Hypothetical ...    25   7.4  
U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    25   9.8  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = +3

Query: 81  MSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVY 197
           MSGG    AL+EEDV K+LA   HLG+ N+NFQM+ YVY
Sbjct: 1   MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVY 39


>U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical
           protein K06C4.9 protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 29  GTRVALYAFSRNSYKRNDVGRIRLA 103
           G  V++Y +SRN  K+N +G + L+
Sbjct: 167 GNTVSIYVYSRNHMKKNTIGFLLLS 191


>AF003142-8|AAB54185.2|  205|Caenorhabditis elegans Hypothetical
           protein F57C9.2 protein.
          Length = 205

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 92  SSRHRCVCKSYD*TRIMPPSCRI 24
           SS HRCVCK  +     P  C I
Sbjct: 113 SSVHRCVCKDGECQNDFPGDCPI 135


>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 26  FGTRVALYAFSRNSYKRNDVGRIRLA 103
           FG  +++Y +SR+   +N +G + L+
Sbjct: 35  FGNIISIYVYSRHHMNKNTIGFLLLS 60


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 104  CAQRG-RCD*DACGDHPFGSGKC*FPDGDV 190
            CA++  +CD  A   + FGS  C  PDG V
Sbjct: 2315 CAEKSHKCDRVATCRNTFGSHVCTCPDGHV 2344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,915,843
Number of Sequences: 27780
Number of extensions: 77276
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)