Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P09
         (197 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...    39   4e-04
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...    38   7e-04
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...    38   7e-04
At1g23660.1 68414.m02984 expressed protein contains Pfam profile...    25   5.3  
At5g15100.1 68418.m01769 auxin efflux carrier family protein con...    25   6.9  
At3g63220.2 68416.m07103 kelch repeat-containing F-box family pr...    25   6.9  
At3g63220.1 68416.m07102 kelch repeat-containing F-box family pr...    25   6.9  
At3g08800.1 68416.m01022 expressed protein                             25   6.9  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +3

Query: 102 LALSEEDVTKMLAATTHLGAENVNFQMETYVY 197
           L+  E DV  M AA  HLG +N N+QME YV+
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVF 43


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 114 EEDVTKMLAATTHLGAENVNFQMETYVY 197
           E D+  ML+A  HLG +N N+QME YV+
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVF 44


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 114 EEDVTKMLAATTHLGAENVNFQMETYVY 197
           E D+  ML+A  HLG +N N+QME YV+
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVF 44


>At1g23660.1 68414.m02984 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220; expression
           supported by MPSS
          Length = 264

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -2

Query: 85  DIVAFVRVTTKRV*CHPRAEF---LQPRGIH 2
           D  A V+VTTK   CH   EF   L P G++
Sbjct: 62  DAPAKVKVTTKNGLCHMNIEFKLGLPPEGVY 92


>At5g15100.1 68418.m01769 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 367

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 3   WIPRGCRNSARGWHYTRLVVTLTNATMSGGLDLLA 107
           W P G R    GW  T L +++   T+  G+ +L+
Sbjct: 93  WHPTGGRGGKLGWVITGLSISVLPNTLILGMPILS 127


>At3g63220.2 68416.m07103 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 352

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 194 NVRLHLEINIFRSQMGGRRKHLSHIFLAERKQV*SSRH-RCVC 69
           +V LHL  N+       R    SH     RK++ SS H  CVC
Sbjct: 26  HVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCVC 68


>At3g63220.1 68416.m07102 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 345

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 194 NVRLHLEINIFRSQMGGRRKHLSHIFLAERKQV*SSRH-RCVC 69
           +V LHL  N+       R    SH     RK++ SS H  CVC
Sbjct: 19  HVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCVC 61


>At3g08800.1 68416.m01022 expressed protein
          Length = 936

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 66  LTNATMSGGLDLLALSEEDVTKMLAATTHLGAENVNF 176
           L N  + G L  L +  +D   +L+A  H G  + NF
Sbjct: 421 LVNKCIDGVLKSLEMYPQDEPDILSALFHFGQNHTNF 457


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,746,738
Number of Sequences: 28952
Number of extensions: 74730
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 12,070,560
effective HSP length: 45
effective length of database: 10,767,720
effective search space used: 215354400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)