Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_P07
(326 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 27 0.54
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil... 26 1.3
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 2.9
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 2.9
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 2.9
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 2.9
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 2.9
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 2.9
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 2.9
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 2.9
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 2.9
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 2.9
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 2.9
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 2.9
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 3.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 24 5.1
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz... 24 6.7
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 24 6.7
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc... 24 6.7
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 23 8.8
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 27.5 bits (58), Expect = 0.54
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 119 FPYKFNVPPYFSKTNDVPK 175
FPY + PPY S T+++P+
Sbjct: 730 FPYNTSYPPYMSPTSNMPQ 748
>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 195
Score = 26.2 bits (55), Expect = 1.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 15 TSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLT 128
+S L +H T+ A KS++C SYT+ +T LT
Sbjct: 22 SSTLEVHVTILHVNLA-KSMLCGFIHVSYTSPNNTSLT 58
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.0 bits (52), Expect = 2.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 97 EDILKEHIRLFEARRVRWTV 38
E+ILK H +LF RW++
Sbjct: 362 ENILKHHDQLFSVEITRWSI 381
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 2.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 178 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 5
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 2.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 178 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 5
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 2.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 178 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 5
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 2.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 178 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 5
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 2.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 178 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 5
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 2.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 178 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 5
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 2.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 178 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 5
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 2.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 178 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 5
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 2.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 178 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 5
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 2.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 178 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 5
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 2.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 178 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 5
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 24.6 bits (51), Expect = 3.8
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +2
Query: 98 VYHEGEHFPYKF--NVPPYFSKT 160
VYH GE P++F N+ + KT
Sbjct: 3568 VYHNGEIVPFRFTPNIKEFIGKT 3590
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.2 bits (50), Expect = 5.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 54 RRASKSLICSLRMSSYTTKASTFLTNSTFPLTFLKPMMFLN 176
R + LI + S+ TT STF + S+ + +KP+ L+
Sbjct: 3919 REITTILITASDGSAVTTSLSTFYSASSLASSVVKPLYILS 3959
>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 23.8 bits (49), Expect = 6.7
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +3
Query: 36 STVQRTRRASKSLICSLRMSSYTTKASTFLTNS-TFPLTFLKPMMFLNN 179
+ V + + +C L YTT F TNS P TF + LN+
Sbjct: 64 NNVTEINNDTDAYLCQLLTGQYTTDCYIFDTNSDDKPETFNSSIHLLNS 112
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 23.8 bits (49), Expect = 6.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 99 YTTKASTFLTNSTFPLTFL 155
Y+T ST+L NST L+ L
Sbjct: 164 YSTYTSTYLPNSTIDLSIL 182
>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
Nse5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 23.8 bits (49), Expect = 6.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -3
Query: 201 LGSSNISYCLGTSLVLEK*GGTLNL 127
LG+SN+ YCL ++++ G +N+
Sbjct: 266 LGASNLRYCLSQYILMKGIGIGINI 290
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 23.4 bits (48), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 62 FKEPNMFFKDVFVYHEGEHF 121
F P + DV V+H+GEH+
Sbjct: 250 FDNPGPLY-DVVVFHDGEHW 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,035,180
Number of Sequences: 5004
Number of extensions: 18106
Number of successful extensions: 75
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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