Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P07
         (326 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    27   2.6  
03_01_0177 + 1424773-1424850,1425307-1425391,1425498-1425577,142...    26   8.0  

>09_03_0058 +
           11950668-11950701,11951068-11951106,11951586-11951982,
           11952016-11952314,11953743-11956795
          Length = 1273

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 169 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEH 77
           N++G  + RG+V  +  V++ V YE +  EH
Sbjct: 212 NVVGALRARGHVTILAAVVSNVTYECLSPEH 242


>03_01_0177 +
           1424773-1424850,1425307-1425391,1425498-1425577,
           1425771-1425898,1425962-1426049,1426187-1426277,
           1426712-1426881,1427151-1427438,1427527-1427643,
           1427924-1427976,1428029-1428090,1429042-1429118,
           1429269-1429322,1429417-1429476,1429581-1429658,
           1429805-1429851,1429933-1430051,1430280-1430364,
           1430443-1430557,1430662-1430784,1430869-1430969,
           1431346-1431475
          Length = 742

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
 Frame = +2

Query: 89  DVFVYHEGEHF---PYKFNVPP 145
           D+FV  +GEHF   P KF+V P
Sbjct: 714 DIFVQSDGEHFGFLPTKFSVLP 735


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,142,596
Number of Sequences: 37544
Number of extensions: 104362
Number of successful extensions: 225
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)