Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P07
         (326 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)               29   0.89 
SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)                28   2.1  
SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)                 28   2.1  
SB_23067| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_12636| Best HMM Match : PI-PLC-Y (HMM E-Value=1.2e-18)              26   8.3  
SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)                 26   8.3  

>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
          Length = 722

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 24  LAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLTNS 134
           LA+  +  RTRRA+KSL   L+  S + + S  LT S
Sbjct: 443 LAVKQSSPRTRRANKSLQAPLKPPSSSPRPSKALTGS 479


>SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)
          Length = 579

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 60  ASKSLICSLRMSSYTTKASTFLTNSTFPLTFLKPM 164
           A K LIC+L  S++  + S      T PL++L PM
Sbjct: 96  AFKVLICTLLFSAFRLERSPSTPPITAPLSYLPPM 130


>SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)
          Length = 383

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +3

Query: 21  LLAIHSTVQRTRRASKSLICSLRMSSYT---TKASTFLTNSTFP 143
           L A H+T+ RTR  S+S  CSLR + +    TK+    T+ T P
Sbjct: 232 LYARHNTLTRTRAPSRS--CSLRTAQHPHTGTKSPMLSTHGTTP 273


>SB_23067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +2

Query: 92  VFVYHE--GEHFPYKFNVPPYFS 154
           V+  HE  G+HFP+ +++ PY++
Sbjct: 336 VYCGHEWLGKHFPFSWDLDPYYT 358


>SB_12636| Best HMM Match : PI-PLC-Y (HMM E-Value=1.2e-18)
          Length = 249

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 181 LLFRNIIGFRKVRGNVEFV--RKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVI 11
           LLF+N+I    +R  V +V  R     +V    L   IR+ E  +  W V+  ++  ++
Sbjct: 189 LLFQNVISLESIREGVRYVPFRTPTGVLVSHSGLFVKIRVKEFAQASWKVKGTSRERLL 247


>SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)
          Length = 1334

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 135 LNL*GKCSPSWYTKTSLKNILGSLKHVESAGR 40
           L++  +C PS+  KTS+++ L +   V S GR
Sbjct: 591 LDMWDRCKPSYLFKTSVRSGLRNCGDVNSIGR 622


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,278,670
Number of Sequences: 59808
Number of extensions: 121159
Number of successful extensions: 334
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)