Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_P06
(532 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 27 1.3
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.7
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 26 3.0
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 4.0
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 26 4.0
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 5.3
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 25 5.3
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 7.0
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 25 9.3
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 25 9.3
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 27.5 bits (58), Expect = 1.3
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +1
Query: 178 ARHVLGAAPKPFDKHTFMPSALDFTKPHFETLHSISYXTGLWVTLTHSSIT*SLILKRNF 357
A H++ + PK + L F T ++ + VT TH I S +LK+
Sbjct: 231 AAHLISSVPKDISPQKYFSCILPQVWSLFSTQPRLASQLIIAVTNTHCDIVTSFLLKKLQ 290
Query: 358 ISSALKSMMLS 390
I A K + LS
Sbjct: 291 ILEAPKVIDLS 301
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 86 QLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTP-SCPVRLTLPNR 259
+L S TI P+C++ K + +N L+L+ + L TS P CP++L P++
Sbjct: 228 ELNASVTISG-IPVCIRSKEKMFLNPDCALTLSFICI-FLAQYTSIPLPCPLQLPSPDQ 284
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 267 DPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 416
+P F Q Y IVG I + K + + +P+ K + I + V+E VT+ D
Sbjct: 6 EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 8 EKTFVQSLQKGKSNRMARKLISTMKRQLTL 97
+K F+ +LQKG + +L+STM R LTL
Sbjct: 479 QKKFISALQKGGMLQSIIRLLSTMPR-LTL 507
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.8 bits (54), Expect = 4.0
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +2
Query: 71 STMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL---AMCSVQHLNHSTSTPSCPVR 241
+T+ R+ L +T + +C K+ + I DL+ SL A +Q + TS+ S PV
Sbjct: 219 ATLLRRHLLDKTAKRYHDLCEKRPYKYITTDLLSPSLTCFASDILQTVPEYTSSQSSPVL 278
Query: 242 L 244
L
Sbjct: 279 L 279
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 5.3
Identities = 16/66 (24%), Positives = 25/66 (37%)
Frame = +2
Query: 59 RKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPV 238
R+ ++ + + L + IC Q I L + C L HS+S P C
Sbjct: 1072 RRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKT 1131
Query: 239 RLTLPN 256
+L N
Sbjct: 1132 KLNKNN 1137
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 320 ECVNVTHNPVI*LIECRVSKCGLVKSSALGMKVCLSNGLGAAPSTW 183
+C+N T+N +I E V L +S G +N +G +TW
Sbjct: 560 KCINGTYNGLIKRGEGAVRPFILTRSFFAGTSALAANWIGDTMTTW 605
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 285 LYXRIVGYINAFKHYLKP----YPQEKLHFVGVKINDVVVEKL 401
+Y +++G +N F+ ++ Y + + VKI+ +VV+KL
Sbjct: 385 VYYKLIGILNRFRKSVQRQEENYVNTRSTILSVKIHHIVVQKL 427
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 79 EKAINFVGNYWQENADLYEEEVTKDYQRSYEIVARHVLG 195
+K +N N W L+E+E+ + + +++ AR V G
Sbjct: 131 QKILNAGQNLWFNEIILFEDELADNGKSMFDVRARVVQG 169
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 24.6 bits (51), Expect = 9.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 5 FEKTFVQSLQKGKSNRMARKLISTMKRQLTLSETIGK 115
F+K+ LQKG ++ A + I +KR + + T+GK
Sbjct: 14 FKKSETSELQKGLVSQYAYERIDAVKRTIA-AMTVGK 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,267
Number of Sequences: 5004
Number of extensions: 43507
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -