Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P06
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201...    31   0.58 
05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281     30   1.3  
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478...    27   9.4  

>08_02_1130 +
           24517319-24518149,24519374-24519868,24519954-24520179,
           24520267-24520291,24520925-24521234,24521328-24521888
          Length = 815

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 182 AMCSVQHLNHSTSTPSCPVRLTLPNRTSRPCILSAIXQDCGLH 310
           ++  + HL+ ++ T   P+RLT P    RPC+L     DC +H
Sbjct: 90  SLLGLYHLDDASETRLEPMRLTAPTDRCRPCLL-----DCTVH 127


>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
          Length = 518

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +2

Query: 14  TFVQSLQKG--KSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLS 178
           +F Q+L++   + NR+ R L++  +++    E I +    CMKK+   ++N L  +S
Sbjct: 26  SFDQTLRREDFQDNRLLRSLVNIHEQETYSREIITEAIESCMKKQADNLVNTLDVIS 82


>02_05_0890 -
           32546918-32547088,32547224-32547334,32547705-32547884,
           32547960-32548064,32548333-32548431,32548524-32548679,
           32548772-32548850,32549213-32549278,32549382-32549536,
           32549675-32550034,32550150-32550305,32550779-32550856,
           32551471-32551812
          Length = 685

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +2

Query: 122 PICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLT 247
           PICM       +         MC V HL+H +  P C   LT
Sbjct: 61  PICMAVIKDAFLTACGHSFCYMCIVTHLSHKSDCPCCGNYLT 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,359,731
Number of Sequences: 37544
Number of extensions: 256400
Number of successful extensions: 631
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)