Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P06
         (532 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15169| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_10476| Best HMM Match : Lactamase_B (HMM E-Value=7.4e-08)           28   5.4  
SB_3294| Best HMM Match : DUF755 (HMM E-Value=0.22)                    28   5.4  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_39596| Best HMM Match : TTL (HMM E-Value=0)                         27   9.5  
SB_50382| Best HMM Match : RVT_1 (HMM E-Value=0.026)                   27   9.5  
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)              27   9.5  

>SB_15169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 19/74 (25%), Positives = 37/74 (50%)
 Frame = +2

Query: 8   EKTFVQSLQKGKSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAM 187
           +KT   S   G  N      ++  K  +T +E+  K+TP   K++ +R+++DL++     
Sbjct: 2   DKTSASSNTTGDENENGSFCVAKGKCTVTYAES-AKKTP---KRRERRLVSDLIRADRKQ 57

Query: 188 CSVQHLNHSTSTPS 229
            + +H N    TP+
Sbjct: 58  ANGKHKNGQKRTPT 71


>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 258 ALRDPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDY 419
           ALR P   ++Y   +  ++ FK  LK YP    H   +       + L+ + DY
Sbjct: 187 ALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYIDY 240


>SB_10476| Best HMM Match : Lactamase_B (HMM E-Value=7.4e-08)
          Length = 866

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +2

Query: 197 QHLNHSTSTPSCPVRLTLPNRTSR------PCILSAIXQDCGLH*RIQALPE 334
           QH+  +T TP+C  +L L NR  R      P I SA   +  LH +   LP+
Sbjct: 375 QHILLNTDTPACQRQLQLNNRLQRRLHSIQPTIFSAPHMEHPLHTQWLDLPD 426


>SB_3294| Best HMM Match : DUF755 (HMM E-Value=0.22)
          Length = 884

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 13  DFRTVPTERQIESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSY 168
           D    PT   I S    + F+D+++ NF   Y   + D+ +  +T  Y R Y
Sbjct: 829 DLTDQPTSLLISSNVDILRFYDDRSNNFFRLYDDRSDDISDFTMTHQYSRFY 880


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 34   ERQIESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRS 165
            +  I+    KI   +EK    V  +W+   DL E E T D  RS
Sbjct: 3049 QEDIKQMEDKIAIIEEKKQEMVEKFWKSQNDLSEAESTIDSLRS 3092


>SB_39596| Best HMM Match : TTL (HMM E-Value=0)
          Length = 808

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/64 (25%), Positives = 33/64 (51%)
 Frame = +2

Query: 38  GKSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHST 217
           G  N      ++  K  +T +E+  K+TP   K++ +R+++DL++      + +H N   
Sbjct: 213 GDENENGSFCVAKGKCTVTYAES-AKKTP---KRRERRLVSDLIRADRKQANGKHKNGQK 268

Query: 218 STPS 229
            TP+
Sbjct: 269 RTPT 272


>SB_50382| Best HMM Match : RVT_1 (HMM E-Value=0.026)
          Length = 1036

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 208 PFDKHTFMPSALDFTKPHFETLHSISYXTG-LWVTLTHSSI 327
           PF+KHT +  A +F     +TLH +    G  +++ TH+++
Sbjct: 242 PFNKHTKLKYARNFLPTSCDTLHPLIGLGGRTYLSTTHNTL 282


>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
          Length = 1069

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 37  RQIESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 183
           R  E Y    ++ DEKA  ++  Y ++ A  +  E     +RSY  + +
Sbjct: 136 RDFEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,035,424
Number of Sequences: 59808
Number of extensions: 309112
Number of successful extensions: 863
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)