Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P06
         (532 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53900.2 68418.m06706 expressed protein similar to unknown pr...    31   0.37 
At5g53900.1 68418.m06705 expressed protein similar to unknown pr...    31   0.37 
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica...    30   0.85 
At2g45870.1 68415.m05705 expressed protein contains Pfam profile...    29   1.5  
At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM ...    29   1.5  
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    28   3.4  
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    28   3.4  
At1g11440.1 68414.m01314 expressed protein                             27   7.9  

>At5g53900.2 68418.m06706 expressed protein similar to unknown
           protein (gb|AAF34833.1)
          Length = 377

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 18/76 (23%), Positives = 30/76 (39%)
 Frame = +1

Query: 97  VGNYWQENADLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFMPSALDFTKPHFETLH 276
           + NYWQ + D    E T  ++   + +A    G           +P  L F     +   
Sbjct: 136 LANYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRQMFE 195

Query: 277 SISYXTGLWVTLTHSS 324
           SI Y +G +++   SS
Sbjct: 196 SIGYRSGFYLSQLFSS 211


>At5g53900.1 68418.m06705 expressed protein similar to unknown
           protein (gb|AAF34833.1)
          Length = 265

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 18/76 (23%), Positives = 30/76 (39%)
 Frame = +1

Query: 97  VGNYWQENADLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFMPSALDFTKPHFETLH 276
           + NYWQ + D    E T  ++   + +A    G           +P  L F     +   
Sbjct: 24  LANYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRQMFE 83

Query: 277 SISYXTGLWVTLTHSS 324
           SI Y +G +++   SS
Sbjct: 84  SIGYRSGFYLSQLFSS 99


>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger (C3HC4 type RING
           finger) family protein low similarity to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 1648

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 56  ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 199
           AR++I T+KR +          P+    +  +++N L+KL  A C  Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766


>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
           PF05249: Uncharacterised protein family (UPF0187)
          Length = 410

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 26/82 (31%), Positives = 41/82 (50%)
 Frame = +2

Query: 5   FEKTFVQSLQKGKSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLA 184
           F  + V S  K   + ++ KLIS +K     S+ I +R  +  K+ L    N +   S  
Sbjct: 39  FNPSCVSSGPKSDDSPLSEKLISLLKAVPNWSDGIKERR-MQQKRSLYTHENWVRHRS-- 95

Query: 185 MCSVQHLNHSTSTPSCPVRLTL 250
             S++HL H +S+PS  V L+L
Sbjct: 96  --SLRHLRHVSSSPSSRVILSL 115


>At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM
           TIGR01640 : F-box protein interaction domain;
          Length = 364

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 514 ESWLTNLEVVWVTSLNLFFGQEYTVSGHQ 428
           ESW  NL ++    ++ +F Q Y V GH+
Sbjct: 39  ESWFVNLNLLRTNRISGYFIQHYIVKGHE 67


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 10  KDFRTVPTERQIESYGKKIDFHDEKAINFV 99
           K F  VP++R+I+ +  K  F+D + + FV
Sbjct: 227 KTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256


>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +1

Query: 58  KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 156
           +K  FH EKA    G + +E  ++ E    +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278


>At1g11440.1 68414.m01314 expressed protein
          Length = 363

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 199 APKPFDKHTFMPSALDFTKPHFETLHSISYXTGLWVTLTH 318
           +P  F  +  + SALDF +P F+      Y  G  V  T+
Sbjct: 110 SPPQFSIYCSVASALDFNEPEFDEYDPTPYGGGYDVVATY 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,153,281
Number of Sequences: 28952
Number of extensions: 217778
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)