Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P05
         (354 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    25   0.30 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   2.1  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    20   8.6  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    20   8.6  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    20   8.6  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 24.6 bits (51), Expect = 0.30
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 265 HPHDSCGHPPAAVPCCMPPSVALSADLTPT 354
           HP+ + G PPA +P    P + L+  +T T
Sbjct: 177 HPYPNFGVPPAGIP-LQNPGLNLNPPVTQT 205



 Score = 19.8 bits (39), Expect = 8.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 36  ASLIYHTNSNSLWLSF*SPPALLYSVYQLCH 128
           A+ I+H  + SL L +  PP +    Y   H
Sbjct: 147 AASIFHAAATSLPLHYPPPPPVYTHHYARYH 177


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 342 VRRQSHRRGHTARYSSRGMP 283
           ++R++H R  T  +++RG P
Sbjct: 274 IQRRTHTRHTTTSHNTRGTP 293


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 82  SDRLLRSYTPCI 117
           +DRL R+Y  CI
Sbjct: 36  NDRLTRNYIDCI 47


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 82  SDRLLRSYTPCI 117
           ++RLL+SY  C+
Sbjct: 41  NERLLKSYVDCL 52


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 351 GRKVRRQSHRRGH 313
           G+  RRQ H R H
Sbjct: 114 GKAFRRQDHLRDH 126


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,368
Number of Sequences: 336
Number of extensions: 1924
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7087595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)