Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P05
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    30   0.12 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    29   0.21 
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    27   1.1  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   2.0  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   4.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   6.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   6.0  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    24   7.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    24   7.9  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       24   7.9  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        24   7.9  
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          24   7.9  

>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 4   HRVPTRTHDLVPVLSTTLIRIHSG-YPSDRLLRSYTPCISFV-TDSYVFSGTI 156
           H V  +  +L+P LS  L  +H+G YP + + +  T CIS      YVF+  I
Sbjct: 257 HSVSPKVKELLPTLSGKL-EVHAGNYPMNDVQQMITKCISQADVADYVFAEVI 308


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 337 PTEPQTGAYSKVQQQGDAHMSHAGVCHRVVR*PGF 233
           P +PQ   YS+V Q G + +  +G    ++R PGF
Sbjct: 868 PYQPQAINYSEVTQPGSSSLPTSGEEANIIRSPGF 902


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 328 PQTGAYSKVQQQGDAHMSHAGVCHRVVR*PG 236
           P+ GAY +   +G AH+   G+ HR ++ PG
Sbjct: 157 PEIGAYLRDLLKGLAHIDAKGIIHRDIK-PG 186


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 199 TPCDFSCQPDPRIPAI*LLCDKHPHDSCGHPPAAVPCCMPPS-VALSADLTP 351
           TP D +C+P+P    I L       DSC   P  +P   P S  +LS   TP
Sbjct: 202 TPMDTTCKPEPSAKKIKL--SPSSEDSCS-IPETLPFSAPKSRGSLSPSETP 250


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 251 YSVT-NTRMTHVGIPLLLYLAVCPRLWLCRRTLRP 352
           YSV     + H GIP +L  A+CP     R  + P
Sbjct: 411 YSVAAGGSLCHPGIPAILISAICPHSLSFRPIILP 445


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 222 LTGEITRGFERSYHQTPQTVSIDCSAKYITVGDKA-DTR 109
           L  E  +  ERS  Q  Q +  D  A Y+ + DKA DTR
Sbjct: 755 LEKEEKKRIERSARQRLQALRADDEAAYLQLLDKAKDTR 793


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 268  PHDSCGHPPAAVPCCMPPSVALSADLTP 351
            P  S G PP   P   PP    SA L P
Sbjct: 1201 PKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +2

Query: 254 SVTNTRMTHVGIPLLLYLAVCPRLWL 331
           ++   R+ +     +LY+ +CP++WL
Sbjct: 311 TMLQNRIAYAFEQAMLYVPLCPQIWL 336


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 283 GHPPAAVPCCMPPSVA 330
           GH  +A P CMP S+A
Sbjct: 143 GHEDSARPGCMPSSIA 158


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 89  ASCALILRVSALSPTVMYLAEQSILTVC 172
           A+ A++ +V+  +PTV YLA  ++L +C
Sbjct: 46  AAFAIVRKVNDRNPTVAYLA-LNLLDIC 72


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 89  ASCALILRVSALSPTVMYLAEQSILTVC 172
           A+  ++ RV++ +PTV YLA   +L +C
Sbjct: 45  AALLILKRVNSANPTVSYLA-LHLLDIC 71


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 264 FVTE*SDSRDSRVRLTGEITRGFERSYHQTPQTVSID 154
           F+ E  D R+  +RL+ EIT   +R      QT S D
Sbjct: 11  FLQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSD 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,498,604
Number of Sequences: 5004
Number of extensions: 29521
Number of successful extensions: 80
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)