Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_P05
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0022 + 324422-324445,324870-325265,325366-325546,325781-32... 31 0.20
04_03_0242 + 13253268-13253317,13254522-13254573,13254654-132547... 29 1.4
06_03_0177 - 17579474-17580109,17580549-17580626,17581160-175813... 28 1.8
05_06_0034 + 25082875-25084113 28 2.4
07_01_0699 - 5276790-5278826 27 3.2
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 27 3.2
01_03_0232 + 14030821-14030904,14031029-14031374,14031475-140315... 27 3.2
11_04_0314 - 16277292-16277927,16278385-16278514,16278934-162792... 26 7.4
06_03_1121 + 27767707-27768065,27768612-27769034,27770013-277701... 26 7.4
>04_01_0022 +
324422-324445,324870-325265,325366-325546,325781-326072,
326389-326461,326610-326700,326815-326894,326992-327234
Length = 459
Score = 31.5 bits (68), Expect = 0.20
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 259 DKHPHDSCGHPPAAVPCCMPPSVALSADLTPT 354
D HPH S PPAA P+ A +AD+TPT
Sbjct: 25 DHHPHLSIDIPPAAASMSPAPTQA-AADITPT 55
>04_03_0242 +
13253268-13253317,13254522-13254573,13254654-13254730,
13254804-13254937,13255645-13255815,13255894-13256035,
13256257-13256443,13256932-13256998,13257846-13257892,
13258623-13258629,13258716-13258786,13259229-13259339,
13260404-13260466,13261050-13261187,13261721-13261826,
13262101-13262147,13262416-13262460,13262538-13262604,
13262683-13262737,13263008-13263214,13264723-13264810,
13264940-13265021,13265274-13265320,13265782-13265941,
13266058-13266224,13266360-13266659,13267144-13267200
Length = 914
Score = 28.7 bits (61), Expect = 1.4
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 11 SLLELMILCQSYLPH*FEFTLVILLIASCALILRVSALSPTVMYLAE 151
S+ ELMI + P FEF + ++ A ILR+S LS + L +
Sbjct: 43 SIAELMIYGDQHDPSYFEFFMEKQIMGEFARILRISKLSRVSLQLLQ 89
>06_03_0177 -
17579474-17580109,17580549-17580626,17581160-17581309,
17581415-17581538,17583227-17583315,17583431-17583507,
17584413-17584822,17586203-17586216
Length = 525
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 340 PPTEPQTGAYSKVQQQGDAHMSHAGVCHRVV 248
PP+E ++ Y +V+ G H+ +C VV
Sbjct: 143 PPSESESNGYLRVRCNGGLSKQHSAICDAVV 173
>05_06_0034 + 25082875-25084113
Length = 412
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 10 VPTRTHDLVPVLSTTLIRIHSGYPSD 87
V R HDLVP++ + L+R+ P D
Sbjct: 62 VSRRFHDLVPLVDSVLVRVDCVIPDD 87
>07_01_0699 - 5276790-5278826
Length = 678
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 217 CQPDPRIPAI*LLCDKHPHDSCGHPPAAVPCCM 315
C P +P LL D P HPPAAV C+
Sbjct: 186 CAPQIAMPETALLEDSAPPPQPVHPPAAVVDCV 218
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 27.5 bits (58), Expect = 3.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 259 DKHPHDSCGHPPAAVPCCMPPSVALS 336
++H + CGH P C PP+ +S
Sbjct: 985 EEHKAEDCGHHPKPKDCAPPPTDCIS 1010
>01_03_0232 +
14030821-14030904,14031029-14031374,14031475-14031599,
14031927-14032023,14032459-14032691,14032765-14032885,
14033319-14033374,14033630-14033703,14034193-14034239,
14034458-14034507,14034860-14034922,14035160-14035240,
14035517-14035627,14035714-14035789,14036216-14036358,
14036775-14036848,14037304-14037409,14037492-14037547,
14038272-14038378,14041150-14041598
Length = 832
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = -2
Query: 341 SADRATDGGIQQGTAAGGCPHESCGCLSQSSQIAGILGSG*QEKSHGVSNA 189
S A +G G A GG H CG I G G ++ + G +A
Sbjct: 706 SGAAAGEGDPVSGAAVGGDDHTGCGTTVDGDPIGGAAARGGEDLAGGDGSA 756
>11_04_0314 -
16277292-16277927,16278385-16278514,16278934-16279217,
16279308-16279431,16280442-16280530,16280630-16280706,
16280790-16280922,16282131-16282211,16282372-16282539
Length = 573
Score = 26.2 bits (55), Expect = 7.4
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 340 PPTEPQTGAYSKVQQQGDAHMSHAGVCHRVV 248
PP E ++ Y +V+ G + + +C+ VV
Sbjct: 129 PPIESESNGYLRVRCNGGLNQQRSAICNAVV 159
>06_03_1121 +
27767707-27768065,27768612-27769034,27770013-27770175,
27770271-27770381,27770895-27770963,27771117-27771203,
27771967-27772752
Length = 665
Score = 26.2 bits (55), Expect = 7.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 269 GCLSQSSQIAGILGSG*QEKSHGVSN 192
GC +S+I G +G G + +HG ++
Sbjct: 316 GCAKMTSRIGGYIGGGNWKSAHGTAH 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,869,118
Number of Sequences: 37544
Number of extensions: 235696
Number of successful extensions: 638
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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