Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P04
         (254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    24   2.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    23   4.9  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    23   4.9  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    23   6.4  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    23   8.5  

>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 136 HLPHDPALYFTLN 98
           HLP+ P+ YFTL+
Sbjct: 165 HLPNGPSFYFTLS 177


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 212  GSVATISATLDEYIYLLLNSQGLTTAPAS*SCAIF 108
            GS+ T+S+    Y+Y +L S    + P    CA F
Sbjct: 1968 GSIYTVSSVFWWYLYRMLPSVASLSLPFLLYCASF 2002


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 229 LSKLALGPLPPFLQH*TSIFICSLIAKASPQHLPHDPAL 113
           L K AL  L  +      + ICS+I ++    +PH P +
Sbjct: 171 LEKKALNCLLSYFAFKGKLDICSVILQSYQLSIPHSPLM 209


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 172 FICSLIAKASPQHLPHDPALYFTLNPRAI 86
           F+  L+AKA    LP DP+ +   N R +
Sbjct: 177 FLSDLVAKAILTVLPKDPSKFNVDNIRVV 205


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 223 KLALGPLPPFLQH*TSIFICSLIAKASPQH 134
           KLAL       Q   S+F+C ++ K    H
Sbjct: 15  KLALAESEDSFQSLVSVFLCPILLKLDSPH 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 807,872
Number of Sequences: 5004
Number of extensions: 11596
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)