Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P04
         (254 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185...    27   2.1  
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277...    26   4.8  
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644...    26   4.8  

>03_01_0238 +
           1854070-1854344,1854621-1854712,1854852-1855045,
           1855529-1855568,1855734-1855815,1856972-1857049,
           1857144-1857269,1857544-1857665,1858018-1858057,
           1858250-1858324,1858414-1858585
          Length = 431

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 161 GADKYTRLMLQKWWQR 208
           GA KY RL  Q WW+R
Sbjct: 267 GAHKYGRLNEQSWWER 282


>02_05_0822 +
           32025992-32026696,32027237-32027314,32027547-32027713,
           32027811-32027885,32028624-32028742,32028908-32029204,
           32029275-32029362,32029467-32029572,32029727-32029837,
           32030520-32030683,32031237-32031357,32031958-32032182,
           32032267-32032457,32032658-32032825,32032911-32033016,
           32033301-32033438,32033533-32033697,32033777-32033980,
           32034341-32034535,32034603-32034674,32034797-32034949
          Length = 1215

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 239 SLAFVQASTGSVATISATLDEYIYLLLNSQGLTTAPAS*SCAI 111
           SLA++QAS   +  +S  L   +  L NS    T   + SC +
Sbjct: 445 SLAYMQASAQYIKQVSGVLKVGVTTLRNSSSYETPQETYSCQL 487


>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
            6448164-6448243,6449045-6449129,6449221-6449312,
            6449388-6449456,6449544-6449580,6449662-6449744,
            6450427-6450873,6450978-6451014,6451101-6451158,
            6451243-6451382,6451610-6451675,6451794-6451908,
            6453261-6453299,6453482-6453543
          Length = 1927

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 204  CHHFCNIRRVYLSAP**PRPHHST 133
            CHH  N R+  +  P  P P H T
Sbjct: 1653 CHHGMNNRQPIIEEPASPEPEHET 1676


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,763,815
Number of Sequences: 37544
Number of extensions: 90144
Number of successful extensions: 184
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)