Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P04
         (254 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1138| Best HMM Match : CUB (HMM E-Value=0)                          25   7.4  
SB_28362| Best HMM Match : CHB_HEX (HMM E-Value=0.14)                  25   9.8  
SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)                        25   9.8  

>SB_1138| Best HMM Match : CUB (HMM E-Value=0)
          Length = 499

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 84  IMARGLRVKYSAGS*GRCCGEALAIKEQINILV 182
           I+A G   KY+A   G  C  +  I E  NIL+
Sbjct: 136 IVAEGFVAKYTAIQPGTACSPSNTIDENSNILL 168


>SB_28362| Best HMM Match : CHB_HEX (HMM E-Value=0.14)
          Length = 114

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 175 IFICSLIAKASPQHLPHDPALY 110
           ++ CS I    P HLPH+P+ Y
Sbjct: 54  LYFCS-IRIIEPDHLPHNPSGY 74


>SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 598

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -2

Query: 220 LALGPLPPFLQH*TSIFICSLIAKASPQHLPHDPALYFTLNP 95
           LA G L    Q    IF+  L   A   HLP+DP L   L+P
Sbjct: 501 LAQGTLDVMSQ--VGIFMYFLKLDAEELHLPNDPELMRRLDP 540


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,208,432
Number of Sequences: 59808
Number of extensions: 89209
Number of successful extensions: 198
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 16,821,457
effective HSP length: 61
effective length of database: 13,173,169
effective search space used: 302982887
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)