Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P03
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    28   5.5  
01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318     27   7.3  

>04_03_0582 +
           17528335-17529790,17529913-17531651,17531814-17532035,
           17532062-17533525
          Length = 1626

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 96  VPTNYGRTIQGILAYDKTNSGASANVTQGGL 188
           V    G   Q +L YD+TN+GA + VT   L
Sbjct: 431 VAKGLGTVKQAVLEYDQTNTGAVSGVTPRAL 461


>01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318
          Length = 878

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = -2

Query: 158 SRIGLIVCEDTLNRSTVVSRYTRQRKIQILNSLLEYFRTVLYIV 27
           SR+ L+  + TL   T ++R   +  ++I+N+L +  + V++IV
Sbjct: 607 SRVILLDYDGTLVPQTTINRTPNESVVKIMNALCDDKKNVVFIV 650


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,178,618
Number of Sequences: 37544
Number of extensions: 191191
Number of successful extensions: 351
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)