Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P03
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55478| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)                27   7.5  
SB_40220| Best HMM Match : RTP801_C (HMM E-Value=2.4)                  27   9.9  

>SB_55478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 27  HDVQYSSKIFKKRVENLYFSLPSVPTNYGRTIQGILAYDK 146
           HD++    +F  R  NL   +PS P ++G     ++ + K
Sbjct: 28  HDIRNLHLVFYFRTSNLQGHVPSAPHSFGEVHTAVVGHQK 67


>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
          Length = 1161

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 203  EPSHEERPRTGNTLRRICLRLNLRFYC 283
            E S EE  + G TLR ICL   L F C
Sbjct: 1017 ETSTEEASKNGTTLRTICL-FKLMFQC 1042


>SB_40220| Best HMM Match : RTP801_C (HMM E-Value=2.4)
          Length = 230

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 27  HDVQYSSKIFKKRVENLYFSLPSVPTNYGRTIQGILAYDKTNSGAS 164
           H ++YS +   K V   YF L S+     R +  I+  D+T+  A+
Sbjct: 87  HKIRYSDRFTFKSVALPYFRLESLTGQEARELLDIIRKDETSLAAA 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,999,936
Number of Sequences: 59808
Number of extensions: 249997
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)