Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P03
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-5|AAA96193.1|  463|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF068709-14|AAC19258.2|  312|Caenorhabditis elegans Serpentine r...    27   6.6  
U64840-3|AAB04961.2|  317|Caenorhabditis elegans Serpentine rece...    27   8.7  

>U53338-5|AAA96193.1|  463|Caenorhabditis elegans Hypothetical
           protein C05E11.7 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/77 (23%), Positives = 32/77 (41%)
 Frame = +3

Query: 18  IYHHDVQYSSKIFKKRVENLYFSLPSVPTNYGRTIQGILAYDKTNSGASANVTQGGLGYN 197
           I  H +  +S       +N+Y +LP     Y R  +   A + TN+ A+           
Sbjct: 234 IQEHPMVLTSPATPSTADNIYIALPEQTNVYLRPQRPTFAANLTNNNAAQLYPNQVELQE 293

Query: 198 FMNLRMKSDRGREIHYD 248
             N+  K D G+++ Y+
Sbjct: 294 KSNIWNKGDYGQKVQYN 310


>AF068709-14|AAC19258.2|  312|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 61 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 276 FTVK-NNCFLIFKHNMYVLDLHFIVFFFTTNI 368
           F +K N  FL+F  ++  L L +I+  + TN+
Sbjct: 258 FVIKINQTFLVFSSDLMTLSLPYILLIYDTNV 289


>U64840-3|AAB04961.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 67 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 288 NNCFLIFKHNMYVLDLHFIVFFFTTNI 368
           NN  ++F   +  L L +++ FF TN+
Sbjct: 267 NNTIMVFCSGLMTLSLPYVLLFFDTNV 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,754,620
Number of Sequences: 27780
Number of extensions: 201695
Number of successful extensions: 436
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)