Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P03
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.1  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 442 IYYQM--ILEV*QLFYCFSVTIVLGNYNVLFSTLHL 543
           +YY M  I EV + FY   + I L    +LF T+H+
Sbjct: 141 VYYTMGQIREVARHFYHKELQIELVREEILFDTVHV 176


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 385 NHVNLLYGISRVNYNRQITIYYQMILEV*QLFYCFSVTIVLGNY 516
           N+ N  Y  +  NYN      Y  I  + Q+     V I  GN+
Sbjct: 92  NNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPVPVPVPIYCGNF 135


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 16  SSTITMYSTVRKYSRRELRICIFRCRVYRLTTVERFRVSSHT 141
           +STI +   +RK  RR   +C    ++Y     E  R + H+
Sbjct: 98  NSTIAVCVCMRKCPRRHRPVCASNGKIY-ANHCELHRAACHS 138


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 299 KTIIFNSKIVGLSVDIYVVV 240
           K ++F   +VGLSV I +V+
Sbjct: 300 KYLLFTMILVGLSVVITIVI 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,789
Number of Sequences: 438
Number of extensions: 2413
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)