Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P03
         (543 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20180.1 68414.m02522 hypothetical protein similar to At14a (...    28   4.6  
At4g09190.1 68417.m01520 F-box family protein contains Pfam PF00...    27   6.1  

>At1g20180.1 68414.m02522 hypothetical protein similar to At14a
           (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
          Length = 391

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 158 SRIGLIVCEDTLNRSTVVSRYTRQRKIQILNSLLEYF 48
           SR+   +C++  +R TV +   + RKI++L   L  F
Sbjct: 314 SRLAGRLCDEIEHRKTVAAMCAKSRKIEVLKEALREF 350


>At4g09190.1 68417.m01520 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain; similar to Probable
           disease resistance RPP8-like protein 2
           (Swiss-Prot:Q9MAG6) [Arabidopsis thaliana]
          Length = 383

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 78  YFSLPSVPTNYGRTIQGILAYDKTN 152
           +F+LP + +  GR + G L YD  N
Sbjct: 141 FFTLPKLDSKEGRPLTGFLGYDPIN 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,590,739
Number of Sequences: 28952
Number of extensions: 169580
Number of successful extensions: 315
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)