Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P02
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   120   1e-28
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    81   8e-17
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    72   5e-14
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   4.1  
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    26   4.1  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   5.5  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   7.2  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  120 bits (289), Expect = 1e-28
 Identities = 54/92 (58%), Positives = 68/92 (73%)
 Frame = +3

Query: 138 KDGDMLTMHYTGTLSDGHKFDSSFDRDQPFTFQLGVGQVIKGWDQGLRDMCVGEKRKLTI 317
           K GD +TMHYTGTL++G KFDSS DR  PF   +GVGQ+I+GWD+G+  M +GEK KLTI
Sbjct: 18  KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTI 77

Query: 318 PSSLGYGNRGAGNVIPPHATLHFEVELINIGD 413
               GYG RG   +IPP++TL F+VEL+ I D
Sbjct: 78  TPDYGYGPRGFPGLIPPNSTLLFDVELLAIND 109


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 81.4 bits (192), Expect = 8e-17
 Identities = 41/102 (40%), Positives = 61/102 (59%)
 Frame = +3

Query: 102 VLSVPEGCTTKSKDGDMLTMHYTGTLSDGHKFDSSFDRDQPFTFQLGVGQVIKGWDQGLR 281
           V  V  G    + +G  + M Y G L +G  FD +  + +PF F LG G+VI+GWD G+ 
Sbjct: 261 VTDVKTGSGASATNGKKVEMRYIGKLENGKVFDKN-TKGKPFAFILGRGEVIRGWDVGVA 319

Query: 282 DMCVGEKRKLTIPSSLGYGNRGAGNVIPPHATLHFEVELINI 407
            M  G +RK+TIP+ + YGN+     IP ++TL FEV+L+ +
Sbjct: 320 GMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 72.1 bits (169), Expect = 5e-14
 Identities = 39/110 (35%), Positives = 65/110 (59%)
 Frame = +3

Query: 78  EVTELKIDVLSVPEGCTTKSKDGDMLTMHYTGTLSDGHKFDSSFDRDQPFTFQLGVGQVI 257
           +V E  + V    +G    +K    ++M Y G L++G  FD +    +PFTF LG+ +VI
Sbjct: 254 QVLEGNVTVQDKVKGDGPAAKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVI 312

Query: 258 KGWDQGLRDMCVGEKRKLTIPSSLGYGNRGAGNVIPPHATLHFEVELINI 407
           KGWD G+  M VG +R + IP+++ YG++     IP ++ L F+V+L+ +
Sbjct: 313 KGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLLAV 361


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 328 WATAIAEPAM*SHLTPLFTSKSN*STSVTHPR 423
           W T +    +  H+  +FT+  N ST +TH R
Sbjct: 290 WVTILPARKLGPHMEHVFTNLQNNSTPMTHVR 321


>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +3

Query: 345 GAGN-VIPPHATLHFEVEL 398
           G GN +IPP  + H+EVEL
Sbjct: 44  GHGNLIIPPDVSAHYEVEL 62


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 336 GNRGAGNVIPPHATLHFEVELINIGDSP 419
           G  G+G + P  AT +FE ++ NI D P
Sbjct: 376 GKLGSGLINPLVATQNFEYKMSNILDKP 403


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +3

Query: 204 SFDRDQPFTFQLGVGQVIKGWDQGLRDMCVGEKRKLTIPSSLG 332
           SF +D  +    G    ++ WD    + CV E+  +  P + G
Sbjct: 305 SFSQDGNYLLSRGEDNALRVWDLRNSNKCVNERIDILTPKAGG 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,452
Number of Sequences: 5004
Number of extensions: 43319
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)