Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P01
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    28   1.1  
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    27   1.9  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   4.4  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    25   5.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   7.6  

>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 43  TILAVLLGLVALTYVNGNKVKSYICQG-YYGCEKCCVHLGSGCEKLKSSPFW 195
           T+L + L LV+ T  +    +   C G YY    CCV +GS C  + S+P++
Sbjct: 9   TVLTLALSLVSKTSASQCSPRYGTCGGIYYDGPTCCV-VGSSC--IYSNPWY 57


>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 96  ITVDVSQGYEAQ*NSQDCEFRHF 28
           + VDV +G+E   +++DCEF+ F
Sbjct: 162 MAVDVPEGFELLGSTEDCEFQIF 184


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 18/55 (32%), Positives = 21/55 (38%)
 Frame = -3

Query: 293 LNTSKFNSLMESPKYGSTPSGQVQVQTSV*LPNQNGEDFNFSQPEPR*TQHFSQP 129
           L+   FN   +  K          V   V  PNQ   + NFS       QHFSQP
Sbjct: 192 LDPEVFNQQSKETKKSLQVPPSRNVPPPVTRPNQYNPEPNFSLSSGYPQQHFSQP 246


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 79  TYVNGNKVKSYIC--QGYYGCEKCCVHLGSGCEKLKSSPFWFG 201
           T+ + N++    C  + +Y  +  C H G+   K ++S +W G
Sbjct: 361 TFEHANRIICGYCAMESFYKKDATCPHCGNMTVKKQTSAYWEG 403


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 123 ILRLREMLCSPWFRLREVKIL 185
           +L+L E +  PW   REVK+L
Sbjct: 120 VLKLLENMPMPWEEYREVKVL 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,503
Number of Sequences: 5004
Number of extensions: 39766
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)