Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P01
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0186 + 9365179-9365342,9367332-9367403,9368362-9368433,936...    29   3.4  
05_03_0205 - 10012256-10012588,10012676-10012826,10012909-100131...    28   4.4  
01_01_0773 + 6002563-6003069,6003183-6003299,6003447-6003539           28   5.9  
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166...    27   7.7  
05_03_0209 + 10139857-10140041,10140223-10140294,10140374-101404...    27   7.7  

>05_03_0186 +
           9365179-9365342,9367332-9367403,9368362-9368433,
           9368719-9368790,9368889-9368954,9369043-9369114,
           9369716-9369790,9370059-9370124,9370360-9370404,
           9370713-9371064,9371147-9371393,9371418-9371576,
           9371659-9371807,9371878-9372088,9372242-9372473,
           9372557-9372707,9373147-9373494
          Length = 850

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = -1

Query: 514 TSGGNAFTVLNKINVLKIKALYLKIHYY*NKKKTNSLQYEKIETNEWFFLFKTSSNSHCF 335
           T+GG +FT +N+     +   +L+IH +   K T+ +  +         L  T S   C+
Sbjct: 365 TAGGKSFTAINRTYTATVLKNFLEIHLFWAGKGTSGIPTQGYYGPMISALSVTPSKQTCY 424

Query: 334 YTIN 323
              N
Sbjct: 425 INFN 428


>05_03_0205 -
           10012256-10012588,10012676-10012826,10012909-10013140,
           10013310-10013520,10013649-10013767,10013851-10014009,
           10014082-10014283,10014368-10014738,10014827-10014891,
           10014981-10015025,10015096-10015161,10015257-10015322,
           10015591-10015665,10015743-10015814,10016264-10016335,
           10016595-10016666,10017554-10017625,10017706-10017777,
           10023644-10023830,10024597-10024852
          Length = 965

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -1

Query: 514 TSGGNAFTVLNKINVLKIKALYLKIHYY 431
           T+GG +FTV+N+  ++ +   +L+IH +
Sbjct: 510 TAGGKSFTVVNRSFMVTVSKNFLEIHLF 537


>01_01_0773 + 6002563-6003069,6003183-6003299,6003447-6003539
          Length = 238

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 244 RLRLDRYRCRPQCNFRTRTARILTSRSRNQGEHSISRN 131
           R R+ R R  P+C +R  TAR   + ++   EH    N
Sbjct: 27  RRRVARVRLAPRCQWRPLTARAQAAATQPDPEHQAPAN 64


>07_03_0909 +
           22512313-22512474,22513151-22513465,22513539-22516633,
           22516812-22516910,22517031-22517379
          Length = 1339

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 391 IETNEWFFLFKTSSNSHCFYT 329
           I TN+W  LF+TS + HC  T
Sbjct: 143 IMTNDWEVLFETSLDPHCDLT 163


>05_03_0209 +
           10139857-10140041,10140223-10140294,10140374-10140445,
           10141095-10141166,10141427-10141498,10141628-10141663,
           10141958-10142029,10142107-10142181,10142449-10142514,
           10142610-10142675,10142748-10142792,10142882-10142946,
           10143066-10143445,10143530-10143728,10143801-10143959,
           10144042-10144160,10144294-10144504,10145336-10145567,
           10145650-10145800,10145899-10146162
          Length = 870

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -1

Query: 514 TSGGNAFTVLNKINVLKIKALYLKIHYY*NKKKTNSL 404
           T+GG +F V+N+  ++ +   +L+IH +   K T+++
Sbjct: 439 TAGGKSFRVVNRSFMVTVSKNFLEIHLFWAGKGTDAI 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,882,708
Number of Sequences: 37544
Number of extensions: 236034
Number of successful extensions: 681
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)