Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P01
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   2.3  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   2.3  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    27   7.0  
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    27   7.0  
AC006631-1|AAF39793.2|  787|Caenorhabditis elegans Hypothetical ...    27   7.0  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    27   7.0  

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 160  SGCEKLKSSPFWFGSYTEVCTCTCPDGVDPYLGDS 264
            SGCE+ + S       +    C CPDG+ P L  S
Sbjct: 4479 SGCERAQCSHLCVSLPSTGFACLCPDGIVPQLDGS 4513


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 160  SGCEKLKSSPFWFGSYTEVCTCTCPDGVDPYLGDS 264
            SGCE+ + S       +    C CPDG+ P L  S
Sbjct: 4479 SGCERAQCSHLCVSLPSTGFACLCPDGIVPQLDGS 4513


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 145  CVHLGSGCEKLKSSPFWFGSYTEVCTCTCPDGVDPYLGDSIS 270
            C      C+++ +    FGS+     CTCPDG   ++GD I+
Sbjct: 2315 CAEKSHKCDRVATCRNTFGSHV----CTCPDG---HVGDGIT 2349


>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 19  TRNEMSKFTILAVLLGLVALTYVNGNKVKSYIC 117
           T+ E SKF+I+  +   ++L  + G + K++IC
Sbjct: 104 TKEESSKFSIVEFVSVAMSLVSIRGVETKNFIC 136


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 19  TRNEMSKFTILAVLLGLVALTYVNGNKVKSYIC 117
           T+ E SKF+I+  +   ++L  + G + K++IC
Sbjct: 104 TKEESSKFSIVEFVSVAMSLVSIRGVETKNFIC 136


>AC006631-1|AAF39793.2|  787|Caenorhabditis elegans Hypothetical
           protein F27B3.5 protein.
          Length = 787

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 76  LTYVNGNKVKSY-ICQGYYGCEKCCVHLGSGCEKLKSSPFWFGSYTEVCTCTCPDGVDPY 252
           L  V+ NK+++  + +    C  CC+ L    E ++     FGS+   C+   PD VD +
Sbjct: 280 LESVSQNKLETIDMFEAVAECTYCCL-LDKYLELVQVWFPQFGSHKMFCSILPPDPVDIF 338

Query: 253 LGDSIS 270
           LG S S
Sbjct: 339 LGVSSS 344


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
           protein C09E7.7 protein.
          Length = 995

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 76  LTYVNGNKVKSY-ICQGYYGCEKCCVHLGSGCEKLKSSPFWFGSYTEVCTCTCPDGVDPY 252
           L  V+ NK+++  + +    C  CC+ L    E ++     FGS+   C+   PD VD +
Sbjct: 487 LESVSQNKLETIDMFEAVAECTYCCL-LDKYLELVQVWFPQFGSHKMFCSILPPDPVDIF 545

Query: 253 LGDSIS 270
           LG S S
Sbjct: 546 LGVSSS 551


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,634,276
Number of Sequences: 27780
Number of extensions: 230360
Number of successful extensions: 636
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)