BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0003_P01 (562 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 2.3 M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 2.3 U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 27 7.0 U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein ... 27 7.0 AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 prote... 27 7.0 AC006631-1|AAF39793.2| 787|Caenorhabditis elegans Hypothetical ... 27 7.0 AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical ... 27 7.0 >Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein F29D11.1 protein. Length = 4753 Score = 29.1 bits (62), Expect = 2.3 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +1 Query: 160 SGCEKLKSSPFWFGSYTEVCTCTCPDGVDPYLGDS 264 SGCE+ + S + C CPDG+ P L S Sbjct: 4479 SGCERAQCSHLCVSLPSTGFACLCPDGIVPQLDGS 4513 >M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related protein protein. Length = 4753 Score = 29.1 bits (62), Expect = 2.3 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +1 Query: 160 SGCEKLKSSPFWFGSYTEVCTCTCPDGVDPYLGDS 264 SGCE+ + S + C CPDG+ P L S Sbjct: 4479 SGCERAQCSHLCVSLPSTGFACLCPDGIVPQLDGS 4513 >U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein ZK783.1 protein. Length = 2585 Score = 27.5 bits (58), Expect = 7.0 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +1 Query: 145 CVHLGSGCEKLKSSPFWFGSYTEVCTCTCPDGVDPYLGDSIS 270 C C+++ + FGS+ CTCPDG ++GD I+ Sbjct: 2315 CAEKSHKCDRVATCRNTFGSHV----CTCPDG---HVGDGIT 2349 >U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein 756 protein. Length = 425 Score = 27.5 bits (58), Expect = 7.0 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +1 Query: 19 TRNEMSKFTILAVLLGLVALTYVNGNKVKSYIC 117 T+ E SKF+I+ + ++L + G + K++IC Sbjct: 104 TKEESSKFSIVEFVSVAMSLVSIRGVETKNFIC 136 >AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 protein protein. Length = 425 Score = 27.5 bits (58), Expect = 7.0 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +1 Query: 19 TRNEMSKFTILAVLLGLVALTYVNGNKVKSYIC 117 T+ E SKF+I+ + ++L + G + K++IC Sbjct: 104 TKEESSKFSIVEFVSVAMSLVSIRGVETKNFIC 136 >AC006631-1|AAF39793.2| 787|Caenorhabditis elegans Hypothetical protein F27B3.5 protein. Length = 787 Score = 27.5 bits (58), Expect = 7.0 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +1 Query: 76 LTYVNGNKVKSY-ICQGYYGCEKCCVHLGSGCEKLKSSPFWFGSYTEVCTCTCPDGVDPY 252 L V+ NK+++ + + C CC+ L E ++ FGS+ C+ PD VD + Sbjct: 280 LESVSQNKLETIDMFEAVAECTYCCL-LDKYLELVQVWFPQFGSHKMFCSILPPDPVDIF 338 Query: 253 LGDSIS 270 LG S S Sbjct: 339 LGVSSS 344 >AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical protein C09E7.7 protein. Length = 995 Score = 27.5 bits (58), Expect = 7.0 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +1 Query: 76 LTYVNGNKVKSY-ICQGYYGCEKCCVHLGSGCEKLKSSPFWFGSYTEVCTCTCPDGVDPY 252 L V+ NK+++ + + C CC+ L E ++ FGS+ C+ PD VD + Sbjct: 487 LESVSQNKLETIDMFEAVAECTYCCL-LDKYLELVQVWFPQFGSHKMFCSILPPDPVDIF 545 Query: 253 LGDSIS 270 LG S S Sbjct: 546 LGVSSS 551 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,634,276 Number of Sequences: 27780 Number of extensions: 230360 Number of successful extensions: 636 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 604 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 636 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1155524042 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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