Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P01
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22840.1 68415.m02712 expressed protein identical to transcri...    28   3.7  
At5g51750.1 68418.m06417 subtilase family protein similar to sub...    27   6.5  
At1g12610.1 68414.m01465 DRE-binding protein, putative / CRT/DRE...    27   6.5  
At5g41590.1 68418.m05053 hypothetical protein contains Pfam prof...    27   8.6  
At2g38080.1 68415.m04674 laccase, putative / diphenol oxidase, p...    27   8.6  
At2g05530.1 68415.m00585 glycine-rich protein                          27   8.6  
At2g05380.1 68415.m00566 glycine-rich protein (GRP3S) identical ...    27   8.6  
At1g79150.1 68414.m09229 expressed protein ; expression supporte...    27   8.6  

>At2g22840.1 68415.m02712 expressed protein identical to
           transcription activator GRL1 [Arabidopsis thaliana]
           GI:21539880 (unpublished); supporting cDNA
           gi|21539879|gb|AY102634.1|
          Length = 530

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 275 NSLMESPKYGSTPSGQVQVQTSV*LPNQN 189
           NS   SPK+GS+P+G +Q  T   L N +
Sbjct: 466 NSTTNSPKFGSSPTGVLQKSTFGSLSNSS 494


>At5g51750.1 68418.m06417 subtilase family protein similar to
           subtilisin-like protease GI:3687307 from [Lycopersicon
           esculentum]
          Length = 780

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = -2

Query: 252 IRVDSVWTGTGADLSVTSEPERRGF*LLAAGTKVNTAFLATVVSL 118
           + + + WTG  A  S++S+P R  F +L +GT ++   ++ V +L
Sbjct: 529 VNILAAWTGDMAPSSLSSDPRRVKFNIL-SGTSMSCPHVSGVAAL 572


>At1g12610.1 68414.m01465 DRE-binding protein, putative /
           CRT/DRE-binding factor, putative similar to DREB1A
           GI:3738224 from [Arabidopsis thaliana] and to
           transcriptional activator CBF1 GI:1899058 from
           [Arabidopsis thaliana
          Length = 209

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 157 GSGCEKLKSSPFWFGSYTEVCT 222
           GSG E+  SS + FG Y EV T
Sbjct: 144 GSGSEERNSSSYGFGDYEEVST 165


>At5g41590.1 68418.m05053 hypothetical protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567)
          Length = 221

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 37  KFTILAVLLGLVALTYVNG-NKVKSYICQGYYGCEKC-CVHL 156
           K  IL+    ++A  Y    +K  SYI +G Y C+ C  VH+
Sbjct: 129 KMNILSTKSDILAYVYSGSFDKKNSYIIKGSYRCKSCKIVHV 170


>At2g38080.1 68415.m04674 laccase, putative / diphenol oxidase,
           putative similar to diphenol oxidase [Nicotiana
           tabacum][GI:1685087]
          Length = 558

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = -1

Query: 547 IGLQSCTTSSLTSGGNAFTVLNKINVLKIKALYLKIHYY 431
           +GL +C T    +G      +N +  +  K   L  HY+
Sbjct: 361 LGLNACPTCKAGNGSRVVASINNVTFIMPKTALLPAHYF 399


>At2g05530.1 68415.m00585 glycine-rich protein 
          Length = 115

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 118 QGYYGCEKCCVHLGSGCE 171
           +GY+GC +CC + G   +
Sbjct: 93  RGYHGCSRCCSYAGEAVQ 110


>At2g05380.1 68415.m00566 glycine-rich protein (GRP3S) identical to
           cDNA glycine-rich protein 3 short isoform (GRP3S)
           GI:4206766
          Length = 116

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 118 QGYYGCEKCCVHLGSGCE 171
           +GY+GC +CC + G   +
Sbjct: 94  KGYHGCSRCCSYAGEAVQ 111


>At1g79150.1 68414.m09229 expressed protein ; expression supported
           by MPSS
          Length = 495

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 505 GNAFTVLNKINVLKIKALYLKIHYY*NKKKTNSLQYEKIETNE 377
           GN   +++ ++VL +K L  K+HY    KK+   + E  E  +
Sbjct: 83  GNGEILVDPVDVLPVKTLDGKLHYRTESKKSKLAEAETDEAEK 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,777,042
Number of Sequences: 28952
Number of extensions: 204245
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)