Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O23
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     29   0.16 
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    29   0.28 
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   1.1  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   3.5  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   4.6  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    24   6.1  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    24   6.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    24   8.0  

>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = +2

Query: 107 YSIFVFFIKYIYTVQFVFFFRF---YASFIIVI*SLIQSALFTNIVL-FGVLTSFVGAVF 274
           +S+F  F K    +QF+F F     Y  ++++  S +   L + +VL FG++++ +   F
Sbjct: 135 WSLFNSFSK----IQFLFGFHVQGKYLPYVLLGFSFLTGGLPSLVVLGFGIISAMIVNFF 190

Query: 275 SAAGFHVNRRGFDPQLSKSKIGPSF 349
            +    V  R   P+L+  K+  +F
Sbjct: 191 DSIHTPVVHRSNSPKLNSQKVSGTF 215


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 28.7 bits (61), Expect = 0.28
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +2

Query: 71  LETVLITIYM*LYS---IFVFFIKYIYTVQFVFFFRFYASFIIVI*SLIQSALFTNIVLF 241
           LET+ ++ Y    S   IFVFF   I+ ++   +     + +I    ++  A  T  VL 
Sbjct: 145 LETITLSFYTMCRSSILIFVFFFSVIFRIEMFDWILLCITLVISAGVVLMVATETQFVLS 204

Query: 242 GVLTSFVGAVFS 277
           G L     +V S
Sbjct: 205 GFLLVMASSVLS 216


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 69  YLCKLALMKLKKYPL 25
           Y CKLA + L+KYPL
Sbjct: 500 YFCKLAKLLLRKYPL 514


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 160 FFSFLCFIY-YCY-MKPHSKCIVY*YSIIWSF 249
           F++ LC  Y Y Y + PHS   VY   II +F
Sbjct: 461 FYALLCCYYIYSYKLIPHSSIFVYTVPIISTF 492


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 160 FFSFLCFIYYCYMKPHSKCIVY*YSI 237
           F+S LCF+ +  +  H  C +Y +++
Sbjct: 35  FYSILCFLSFFALLLHLPCSIYSHTL 60


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 282 PDSTSIDAGSIPNYPSLKLGRAFGA 356
           P++   + G IP+ PSL  GRA  A
Sbjct: 371 PENGKPNMGRIPSAPSLSKGRAMTA 395


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 122 FFIKYIYTVQFVFFFRFYASFIIVI*SLIQSALFTNIVLFGVLTSFVGAV 271
           FFI Y++T+   F       FI ++ +  + A     +   VL  F GAV
Sbjct: 542 FFIFYLFTIVITFCMSAVFRFIALLSTTAEIAALIGGIGALVLIIFCGAV 591


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 151 VCFFFSFLCFIYY 189
           V FFFS +C +YY
Sbjct: 453 VHFFFSLVCVVYY 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,370,259
Number of Sequences: 5004
Number of extensions: 25529
Number of successful extensions: 67
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)