Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O23
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540...    27   5.7  
03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419     26   7.6  

>08_02_0580 -
           18953208-18953513,18953668-18953868,18953929-18954009,
           18954096-18954410,18954493-18954636,18954733-18954822,
           18954907-18954983,18955122-18955182,18955264-18955490,
           18955581-18955740,18955825-18956025,18956114-18956209,
           18956380-18956565,18956641-18956810,18957044-18957275,
           18958652-18959029
          Length = 974

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
 Frame = +2

Query: 26  NGYFFNFISANLHK*LETVLITIYM*LYSIFVFFIKYIYTVQFVFFFRF---YASFIIVI 196
           + Y+ ++++      L + L+T+   +   F FF+   + + F+ FF F     SF  +I
Sbjct: 270 SAYWLSWLTWEAFVTLLSALLTVLFGMMFQFDFFLHNNFGILFLLFFLFQLNMLSFAFMI 329

Query: 197 *SLIQSALFTNIVLFGV-LTSFVGAVFSAAGF 289
            + +  A     V F + +  F+  + +  GF
Sbjct: 330 STFVTKAASATTVGFAIFIIGFLTQLVTTFGF 361


>03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419
          Length = 464

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 252 PALLAQCLVRPDSTSIDAGSIPNYPSL 332
           P  LA CL +P++  +DAGS   Y ++
Sbjct: 216 PETLAFCLFQPNAGRVDAGSKIKYTNM 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,808,093
Number of Sequences: 37544
Number of extensions: 127904
Number of successful extensions: 294
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)