Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O23
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66562-3|CAD44123.1|  485|Caenorhabditis elegans Hypothetical pr...    29   0.95 
Z66562-1|CAA91464.1|  519|Caenorhabditis elegans Hypothetical pr...    29   0.95 
Z98851-2|CAB11536.1|  324|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    26   6.7  
AF024503-4|AAG24097.1|  330|Caenorhabditis elegans Serpentine re...    26   6.7  

>Z66562-3|CAD44123.1|  485|Caenorhabditis elegans Hypothetical
           protein F42E11.2c protein.
          Length = 485

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 179 SFIIVI*SLIQSALFTNIVLFGVLTSFVGAVFSAAGFHV 295
           +F++++ S+    LFT +V F   +     VFSA GF +
Sbjct: 218 AFLVILLSITMVVLFTGVVAFCKQSKKGAVVFSAIGFFI 256


>Z66562-1|CAA91464.1|  519|Caenorhabditis elegans Hypothetical
           protein F42E11.2a protein.
          Length = 519

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 179 SFIIVI*SLIQSALFTNIVLFGVLTSFVGAVFSAAGFHV 295
           +F++++ S+    LFT +V F   +     VFSA GF +
Sbjct: 218 AFLVILLSITMVVLFTGVVAFCKQSKKGAVVFSAIGFFI 256


>Z98851-2|CAB11536.1|  324|Caenorhabditis elegans Hypothetical
           protein H12I19.2 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = +2

Query: 131 KYI-YTVQFVFFFRFYASFIIVI*SLIQSALFTNIVLFGVLTSFV--GAVFSAAGFHVNR 301
           KYI +    VF F+   SF+ +   L ++A+   ++ + +LT  V    +   +    N+
Sbjct: 231 KYILWQTMIVFIFKMVTSFVFIDFFLDKAAVTFELIPYIILTDIVITPLIIQISYLGFNK 290

Query: 302 RGFDPQLSKSKIGPSFRC 355
           R     LS  KI P   C
Sbjct: 291 RNIGILLSTLKILPFSNC 308


>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
            constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 232  SIIWSFNQLCWRSV*CGRIPRQSTR 306
            S IWSF  LCW     G +P  + R
Sbjct: 1193 SDIWSFGVLCWEVFSLGVVPYPNRR 1217


>AF024503-4|AAG24097.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein245 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 31/100 (31%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
 Frame = +2

Query: 35  FFNFISANLHK*LETVLITIYM*LYSIFVFFIKYIYTVQFVFFFRFYASFIIVI----*S 202
           FF     NL K  E  L  I    +     F K I T+QFVFF     S II+I     +
Sbjct: 209 FFILTLKNLFK--ENKLFNISRKTFEAQQTFFKAI-TIQFVFFLLMMISPIIMILIIDFT 265

Query: 203 LIQSALFTNIVLFGVLTSFVGAVFSAAGFHVNRRGFDPQL 322
              + +  NIVLF +  S + +       H   R F   L
Sbjct: 266 AYHNQVLNNIVLFPLYLSGILSTIMMLIVHSPYRKFTRNL 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,367,096
Number of Sequences: 27780
Number of extensions: 137751
Number of successful extensions: 406
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)