Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O23
         (357 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73810.1 68414.m08546 expressed protein contains Pfam profile...    29   1.2  
At5g61730.1 68418.m07746 ABC transporter family protein contains...    28   1.6  
At4g22900.1 68417.m03308 expressed protein                             28   2.1  
At5g66770.1 68418.m08416 scarecrow transcription factor family p...    27   2.8  
At4g11720.1 68417.m01870 hypothetical protein                          27   3.7  
At1g42560.1 68414.m04907 seven transmembrane MLO family protein ...    27   3.7  
At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) conta...    27   4.9  

>At1g73810.1 68414.m08546 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 418

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 188 IVI*SLIQS-ALFTNIVLFGVLTSFVGAVFSAAGFHVNRRGFDPQLSK-SKIGPS 346
           IVI  +++S   F N+VL+  L  F   +      H+    F+PQL + S + PS
Sbjct: 23  IVISKILRSHRFFQNLVLYSFLIGFGFGLGFILNVHIRNVSFNPQLFRLSSLSPS 77


>At5g61730.1 68418.m07746 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter
          Length = 940

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +2

Query: 116 FVFFIKYIYTVQFVFFFRFYASFI---IVI*SLI-QSALFTNIVLFGVLTSFVGAVFSAA 283
           F FF+K  + + F+ FF F  + I     + S+I +S+  T +     L  F+  + + A
Sbjct: 300 FEFFLKNSFVLVFLLFFLFQFNMIGLAFALSSIISKSSSATTVGFLVFLVGFITQIVTTA 359

Query: 284 GF 289
           GF
Sbjct: 360 GF 361


>At4g22900.1 68417.m03308 expressed protein 
          Length = 343

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 26/99 (26%), Positives = 45/99 (45%)
 Frame = -1

Query: 354 HRKLGPILDLDSWGSNPRRLTWNPAALNTAPTKLVKTPNNTILVNNAL*MRLHITIINEA 175
           ++ + P+L L ++ +NP  +  NP  +N     +V T  N IL++  +    + T  N  
Sbjct: 127 YKLVSPVLGLLAYNANPDGVARNPYEVN-----VVGTDQNPILIDFLINKATNNTSPNPT 181

Query: 174 *KRKKKTNCTV*MYFIKNTNILYSHI*IVINTVSNYLCK 58
               KK +  +   F  N+N  +S        VS Y+CK
Sbjct: 182 ----KKNSSVLCACFTSNSNTTFS------EQVSPYVCK 210


>At5g66770.1 68418.m08416 scarecrow transcription factor family
           protein
          Length = 584

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 330 DLDSWGSNPRRLTWNPAALNTAPTKLVKTPNN 235
           D D+W  NP  + + P   +T P++L   P++
Sbjct: 132 DCDTWHDNPDYVIYGPDPFDTYPSRLSVQPSD 163


>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 124 FYKVHLYSAVCFFFSFLCFIYYCY 195
           F K H+Y+  CF F F+ F++ C+
Sbjct: 67  FSKTHIYT--CFGFVFINFVFTCF 88


>At1g42560.1 68414.m04907 seven transmembrane MLO family protein /
           MLO-like protein 9 (MLO9) nearly identical to membrane
           protein Mlo9 [Arabidopsis thaliana] GI:14091588; similar
           to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221
           [Hordeum vulgare][Barley]
          Length = 467

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = -1

Query: 285 PAALNTAPTKLVKTPNNTILVNNAL*MRLHITIINEA*KRKKKTNCTV*MYFIKNTNILY 106
           P  L+  PT  V T    I++ + + + L I  + E  +RKKK      +  IKN  ++ 
Sbjct: 13  PRQLDQTPTWAVSTVCGVIILISII-LELIIHKVGEVFERKKKKALFEALEKIKNELMVL 71

Query: 105 SHI*IVINTVSNYLCKLAL 49
             I +++    NY+  + +
Sbjct: 72  GFISLLLTFGQNYIASICV 90


>At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) contains
           Pfam profile PF02453: Reticulon
          Length = 253

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/38 (23%), Positives = 23/38 (60%)
 Frame = +1

Query: 112 YICIFYKVHLYSAVCFFFSFLCFIYYCYMKPHSKCIVY 225
           ++ + + + + S V  +F+FL  +Y C++  H+  ++Y
Sbjct: 173 FLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLY 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,686,860
Number of Sequences: 28952
Number of extensions: 114469
Number of successful extensions: 261
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)