Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O22
(553 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family pr... 53 1e-07
At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family pr... 53 1e-07
At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family pr... 53 1e-07
At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4)... 50 1e-06
At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4)... 50 1e-06
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 48 4e-06
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 48 4e-06
At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family pr... 47 1e-05
At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, ... 46 1e-05
At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family pr... 46 2e-05
At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family pr... 46 2e-05
At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family pr... 44 7e-05
At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family pr... 44 7e-05
At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family pr... 44 7e-05
At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family pr... 44 9e-05
At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family pr... 43 1e-04
At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family pr... 43 1e-04
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 42 3e-04
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 42 3e-04
At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein S... 42 4e-04
At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family pr... 41 5e-04
At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family pr... 41 5e-04
At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family pr... 41 6e-04
At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family pr... 40 0.001
At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family pr... 40 0.001
At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family pr... 40 0.001
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr... 40 0.001
At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family pr... 39 0.002
At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family pr... 39 0.002
At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family pr... 39 0.002
At5g58010.1 68418.m07258 basic helix-loop-helix (bHLH) family pr... 39 0.003
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi... 39 0.003
At4g27120.2 68417.m03898 expressed protein 39 0.003
At4g27120.1 68417.m03897 expressed protein 39 0.003
At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family pr... 38 0.003
At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family pr... 38 0.003
At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family pr... 38 0.004
At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family pr... 38 0.004
At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) / re... 38 0.006
At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family pr... 37 0.008
At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family pr... 37 0.008
At1g59640.1 68414.m06707 basic helix-loop-helix (bHLH) family pr... 37 0.008
At3g57800.2 68416.m06443 basic helix-loop-helix (bHLH) family pr... 37 0.010
At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family pr... 37 0.010
At5g62610.1 68418.m07857 basic helix-loop-helix (bHLH) family pr... 36 0.014
At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family pr... 36 0.018
At5g50915.2 68418.m06314 basic helix-loop-helix (bHLH) family pr... 35 0.042
At5g50915.1 68418.m06313 basic helix-loop-helix (bHLH) family pr... 35 0.042
At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family pr... 35 0.042
At3g57800.1 68416.m06442 basic helix-loop-helix (bHLH) family pr... 34 0.055
At4g01720.1 68417.m00223 WRKY family transcription factor simila... 34 0.073
At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family pr... 33 0.17
At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763... 33 0.17
At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family pr... 33 0.17
At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family pr... 32 0.29
At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family pr... 32 0.29
At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family pr... 31 0.39
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 31 0.39
At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family pr... 31 0.39
At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family pr... 31 0.39
At3g28770.1 68416.m03591 expressed protein 31 0.51
At3g20640.1 68416.m02612 ethylene-responsive protein -related co... 31 0.51
At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family pr... 31 0.51
At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family pr... 31 0.51
At1g25310.1 68414.m03141 basic helix-loop-helix (bHLH) family pr... 31 0.51
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 31 0.51
At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family pr... 30 0.89
At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family pr... 30 0.89
At4g29930.1 68417.m04258 basic helix-loop-helix (bHLH) family pr... 30 0.89
At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family pr... 30 0.89
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 30 0.89
At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family pr... 30 0.89
At2g44200.1 68415.m05500 expressed protein 30 0.89
At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH p... 30 0.89
At1g63650.2 68414.m07202 basic helix-loop-helix (bHLH) family pr... 30 0.89
At1g63650.1 68414.m07201 basic helix-loop-helix (bHLH) family pr... 30 0.89
At3g29075.1 68416.m03637 glycine-rich protein 29 1.6
At3g25710.1 68416.m03199 basic helix-loop-helix (bHLH) family pr... 29 1.6
At1g68810.1 68414.m07866 basic helix-loop-helix (bHLH) family pr... 29 1.6
At5g63720.1 68418.m07998 hypothetical protein 29 2.1
At5g43650.1 68418.m05335 basic helix-loop-helix (bHLH) family pr... 29 2.1
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 29 2.1
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 29 2.1
At2g45130.1 68415.m05616 SPX (SYG1/Pho81/XPR1) domain-containing... 29 2.1
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr... 29 2.1
At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family pr... 29 2.1
At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family pr... 29 2.7
At3g30725.1 68416.m03909 expressed protein ; expression supporte... 29 2.7
At2g22770.1 68415.m02701 basic helix-loop-helix (bHLH) family pr... 29 2.7
At2g20310.1 68415.m02372 expressed protein 29 2.7
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t... 29 2.7
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 29 2.7
At4g09820.1 68417.m01611 basic helix-loop-helix (bHLH) family pr... 28 3.6
At3g30775.1 68416.m03933 proline oxidase, mitochondrial / osmoti... 28 3.6
At2g31730.1 68415.m03874 ethylene-responsive protein, putative s... 28 3.6
At2g28160.1 68415.m03420 basic helix-loop-helix (bHLH) family pr... 28 3.6
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 28 3.6
At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein (... 28 3.6
At5g16500.1 68418.m01928 protein kinase family protein contains ... 28 4.8
At3g21480.1 68416.m02710 transcription activation domain-interac... 28 4.8
At1g17820.1 68414.m02206 expressed protein 28 4.8
At5g41090.1 68418.m04995 no apical meristem (NAM) family protein... 27 6.3
At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family pr... 27 6.3
At4g04890.1 68417.m00712 homeobox-leucine zipper protein protode... 27 6.3
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family... 27 6.3
At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family pr... 27 6.3
At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein gar2... 27 6.3
At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein gar2... 27 6.3
At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 27 6.3
At1g57680.2 68414.m06546 expressed protein 27 6.3
At1g57680.1 68414.m06545 expressed protein 27 6.3
At1g52160.1 68414.m05887 metallo-beta-lactamase family protein 27 6.3
At1g30670.1 68414.m03750 basic helix-loop-helix (bHLH) family pr... 27 6.3
At1g14687.1 68414.m01755 zinc finger homeobox family protein / Z... 27 6.3
At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family pr... 27 6.3
At5g56960.1 68418.m07110 basic helix-loop-helix (bHLH) family pr... 27 8.3
At4g29550.1 68417.m04214 expressed protein contains Pfam profile... 27 8.3
At4g27290.1 68417.m03916 S-locus protein kinase, putative simila... 27 8.3
At3g29763.1 68416.m03760 hypothetical protein 27 8.3
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr... 27 8.3
At1g29570.1 68414.m03616 zinc finger protein-related contains si... 27 8.3
At1g19260.1 68414.m02396 hAT dimerisation domain-containing prot... 27 8.3
>At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 399
Score = 52.8 bits (121), Expect = 1e-07
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Frame = +1
Query: 193 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA-HTQAEQKRRDAIKKGY 369
GS + + H + S EDE++ S++S K R A H Q+E+KRRD I +
Sbjct: 174 GSHDNTIDDHDSVCHSRPQMEDEEEKKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRM 233
Query: 370 DSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
+LQ+LVP +TD KA++L + I+Y++ L Q
Sbjct: 234 KTLQKLVPNSSKTD-------KASMLDEVIEYLKQLQAQ 265
>At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 444
Score = 52.8 bits (121), Expect = 1e-07
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Frame = +1
Query: 250 TEDEDDSGDNKASALSFKERRR---EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASG 420
T +D + NK+S S RR E H +E++RRD I + +LQEL+P C +TD
Sbjct: 234 TSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTD--- 290
Query: 421 YKHSKAAVLQKSIDYIQYLLQQ 486
KA++L ++IDY++ L Q
Sbjct: 291 ----KASILDEAIDYLKSLQMQ 308
>At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 442
Score = 52.8 bits (121), Expect = 1e-07
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Frame = +1
Query: 250 TEDEDDSGDNKASALSFKERRR---EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASG 420
T +D + NK+S S RR E H +E++RRD I + +LQEL+P C +TD
Sbjct: 234 TSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTD--- 290
Query: 421 YKHSKAAVLQKSIDYIQYLLQQ 486
KA++L ++IDY++ L Q
Sbjct: 291 ----KASILDEAIDYLKSLQMQ 308
>At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 428
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/70 (37%), Positives = 42/70 (60%)
Frame = +1
Query: 277 NKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKS 456
N+ S + + R E H +E++RRD I + +LQEL+P C +TD KA++L ++
Sbjct: 247 NQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTD-------KASILDEA 299
Query: 457 IDYIQYLLQQ 486
IDY++ L Q
Sbjct: 300 IDYLKSLQLQ 309
>At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 430
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/70 (37%), Positives = 42/70 (60%)
Frame = +1
Query: 277 NKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKS 456
N+ S + + R E H +E++RRD I + +LQEL+P C +TD KA++L ++
Sbjct: 247 NQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTD-------KASILDEA 299
Query: 457 IDYIQYLLQQ 486
IDY++ L Q
Sbjct: 300 IDYLKSLQLQ 309
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 48.0 bits (109), Expect = 4e-06
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Frame = +1
Query: 205 SIQNIHQTPSSSNQNTED-EDDSGDNKASAL-------SFKERRREAHTQAEQKRRDAIK 360
S++ H + ++ED E++SGD + A S + R E H +E++RRD I
Sbjct: 301 SLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360
Query: 361 KGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
+ +LQEL+P C + D KA++L ++I+Y++ L Q
Sbjct: 361 EKMRALQELIPNCNKVD-------KASMLDEAIEYLKSLQLQ 395
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 48.0 bits (109), Expect = 4e-06
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Frame = +1
Query: 205 SIQNIHQTPSSSNQNTED-EDDSGDNKASAL-------SFKERRREAHTQAEQKRRDAIK 360
S++ H + ++ED E++SGD + A S + R E H +E++RRD I
Sbjct: 301 SLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360
Query: 361 KGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
+ +LQEL+P C + D KA++L ++I+Y++ L Q
Sbjct: 361 EKMRALQELIPNCNKVD-------KASMLDEAIEYLKSLQLQ 395
>At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 311
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/86 (33%), Positives = 46/86 (53%)
Frame = +1
Query: 229 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQT 408
PSS+ + D ++KASA+ R H+ EQ+RR I + + L+EL+P +Q
Sbjct: 25 PSSNTTVHSNRDSKENDKASAI------RSKHSVTEQRRRSKINERFQILRELIPNSEQ- 77
Query: 409 DASGYKHSKAAVLQKSIDYIQYLLQQ 486
K A+ L + IDY+QYL ++
Sbjct: 78 -----KRDTASFLLEVIDYVQYLQEK 98
>At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein,
putative similar to PIF3 like basic Helix Loop Helix
protein (PIL1) [Arabidopsis thaliana] GI:22535492;
contains Myc-type, 'helix-loop-helix' dimerization
domain signature, PROSITE:PS00038
Length = 416
Score = 46.4 bits (105), Expect = 1e-05
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Frame = +1
Query: 202 GSIQNIHQTPSSSNQNTEDEDDSGDNKASA---LSFKERRREAHTQAEQKRRDAIKKGYD 372
G I+ T S+N + E +D A ++ ++R E H E+KRRD K
Sbjct: 191 GDIEEEESTYLSNNSDDESDDAKTQVHARTRKPVTKRKRSTEVHKLYERKRRDEFNKKMR 250
Query: 373 SLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
+LQ+L+P C YK KA++L ++I Y++ L Q
Sbjct: 251 ALQDLLPNC-------YKDDKASLLDEAIKYMRTLQLQ 281
>At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 478
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 232 SSSNQNTEDEDDSGDNKASALSFKERRR-EAHTQAEQKRRDAIKKGYDSLQELVPTCQQT 408
+++++ +++ + S S K R E H +E+KRRD I + +LQEL+P C ++
Sbjct: 258 TTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS 317
Query: 409 DASGYKHSKAAVLQKSIDYIQYLLQQ 486
D KA++L ++I+Y++ L Q
Sbjct: 318 D-------KASMLDEAIEYMKSLQLQ 336
>At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 407
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 232 SSSNQNTEDEDDSGDNKASALSFKERRR-EAHTQAEQKRRDAIKKGYDSLQELVPTCQQT 408
+++++ +++ + S S K R E H +E+KRRD I + +LQEL+P C ++
Sbjct: 187 TTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS 246
Query: 409 DASGYKHSKAAVLQKSIDYIQYLLQQ 486
D KA++L ++I+Y++ L Q
Sbjct: 247 D-------KASMLDEAIEYMKSLQLQ 265
>At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 371
Score = 44.0 bits (99), Expect = 7e-05
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Frame = +1
Query: 193 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASA---------LSFKERRREA---HTQAE 336
GS G ++ SS E D GDNK A + + RR +A H+ AE
Sbjct: 147 GSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAE 206
Query: 337 QKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
+ RR+ I + LQ+LVP C + KA +L + I+Y+Q L +Q
Sbjct: 207 RARREKISERMTLLQDLVPGCNRIT------GKAVMLDEIINYVQSLQRQ 250
>At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;supported by cDNA
gi|20127067|gb|AF488597.1|
Length = 337
Score = 44.0 bits (99), Expect = 7e-05
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +1
Query: 214 NIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQ 381
N+ T +SS+ + E + +N K + + RR +A H+ AE+ RR+ I K LQ
Sbjct: 156 NMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQ 215
Query: 382 ELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
++VP C + KA +L + I+Y+Q L +Q
Sbjct: 216 DIVPGCNKVT------GKAGMLDEIINYVQCLQRQ 244
>At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;supported by cDNA
gi|20127067|gb|AF488597.1|
Length = 335
Score = 44.0 bits (99), Expect = 7e-05
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +1
Query: 214 NIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQ 381
N+ T +SS+ + E + +N K + + RR +A H+ AE+ RR+ I K LQ
Sbjct: 156 NMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQ 215
Query: 382 ELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
++VP C + KA +L + I+Y+Q L +Q
Sbjct: 216 DIVPGCNKVT------GKAGMLDEIINYVQCLQRQ 244
>At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 310
Score = 43.6 bits (98), Expect = 9e-05
Identities = 30/98 (30%), Positives = 50/98 (51%)
Frame = +1
Query: 193 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 372
GS G Q Q+ ++++ T K + + + + H+ AE+ RR+ I +
Sbjct: 100 GSGGQTQT--QSQATASATTGGATAQPQTKPKVRARRGQATDPHSIAERLRRERIAERMK 157
Query: 373 SLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
SLQELVP +TD KA++L + IDY+++L Q
Sbjct: 158 SLQELVPNGNKTD-------KASMLDEIIDYVKFLQLQ 188
>At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 43.2 bits (97), Expect = 1e-04
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Frame = +1
Query: 211 QNIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSL 378
Q Q+P+S+ T E D+ K + + RR +A H+ AE+ RR+ I + L
Sbjct: 193 QKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFL 252
Query: 379 QELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 477
Q+LVP C + KA +L + I+Y+Q L
Sbjct: 253 QDLVPGCDKVT------GKAVMLDEIINYVQSL 279
>At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 43.2 bits (97), Expect = 1e-04
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Frame = +1
Query: 211 QNIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSL 378
Q Q+P+S+ T E D+ K + + RR +A H+ AE+ RR+ I + L
Sbjct: 193 QKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFL 252
Query: 379 QELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 477
Q+LVP C + KA +L + I+Y+Q L
Sbjct: 253 QDLVPGCDKVT------GKAVMLDEIINYVQSL 279
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 41.9 bits (94), Expect = 3e-04
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +1
Query: 235 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQELVPTCQQ 405
S+ NTE + K + + RR EA H+ AE+ RR+ I K LQ++VP C +
Sbjct: 122 SNMSNTETSSEI--QKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNK 179
Query: 406 TDASGYKHSKAAVLQKSIDYIQYLLQQ 486
KA +L + I+Y+Q L QQ
Sbjct: 180 VT------GKAGMLDEIINYVQSLQQQ 200
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 41.9 bits (94), Expect = 3e-04
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +1
Query: 235 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQELVPTCQQ 405
S+ NTE + K + + RR EA H+ AE+ RR+ I K LQ++VP C +
Sbjct: 122 SNMSNTETSSEI--QKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNK 179
Query: 406 TDASGYKHSKAAVLQKSIDYIQYLLQQ 486
KA +L + I+Y+Q L QQ
Sbjct: 180 VT------GKAGMLDEIINYVQSLQQQ 200
>At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein
SPATULA (SPT) identical to SPATULA (SPT) GI:11245493
from [Arabidopsis thaliana]
Length = 373
Score = 41.5 bits (93), Expect = 4e-04
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Frame = +1
Query: 184 SRCGSSGSIQNIHQTPSSSN-QNTEDEDDSGDNKASALSFKERRR--EAHTQAEQKRRDA 354
S G+SG+ + + S + DE S + S+ S +R R E H +E++RR
Sbjct: 153 SSVGASGNETDEYDCESEEGGEAVVDEAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSR 212
Query: 355 IKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
I + +LQ L+P +TD KA++L ++I+Y++ L Q
Sbjct: 213 INEKMKALQSLIPNSNKTD-------KASMLDEAIEYLKQLQLQ 249
>At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 350
Score = 41.1 bits (92), Expect = 5e-04
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Frame = +1
Query: 193 GSSGSIQNIH-QTPSSSNQNTEDEDDSGDNKA----SALSFKERRREA---HTQAEQKRR 348
GS G + N QT + + +G A S + RR +A H+ AE+ RR
Sbjct: 98 GSGGGLMNQQGQTQTQTQPQASASTATGGTVAAPPQSRTKIRARRGQATDPHSIAERLRR 157
Query: 349 DAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
+ I + +LQELVP +TD KA++L + IDY+++L Q
Sbjct: 158 ERIAERMKALQELVPNGNKTD-------KASMLDEIIDYVKFLQLQ 196
>At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 301
Score = 41.1 bits (92), Expect = 5e-04
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Frame = +1
Query: 193 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKK 363
G+ S + S N E K + + + RR +A H+ AE+ RR+ I +
Sbjct: 106 GNDQSQKKHKNDQSKETVNKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISE 165
Query: 364 GYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
LQELVP C + KA +L + I+Y+Q L QQ
Sbjct: 166 RMRLLQELVPGCNKIT------GKAVMLDEIINYVQSLQQQ 200
>At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family
protein component of the pyruvate dehydrogenase complex
E3, contains PF|00010 helix-loop-helix DNA-binding
domain. ESTs gb|T45640 and gb|T22783 come from this gene
Length = 302
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/57 (38%), Positives = 36/57 (63%)
Frame = +1
Query: 316 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
+ H+ AE+ RR+ I + SLQELVPT +TD +AA++ + +DY+++L Q
Sbjct: 153 DPHSIAERLRRERIAERIRSLQELVPTVNKTD-------RAAMIDEIVDYVKFLRLQ 202
>At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 366
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Frame = +1
Query: 235 SSNQNTEDEDDSGDNKASALSFKERRREA-HTQAEQKRRDAIKKGYDSLQELVPTCQQTD 411
S Q+TE ++ +A + + R A H ++E++RRD I + +LQ+L+PT + D
Sbjct: 141 SETQDTEGDEQETRGEAGRSNGRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKAD 200
Query: 412 ASGYKHSKAAVLQKSIDYIQYLLQQXXXXXXXXNALQK 525
K ++L I++++ L Q N Q+
Sbjct: 201 -------KVSILDDVIEHLKQLQAQVQFMSLRANLPQQ 231
>At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 340
Score = 39.9 bits (89), Expect = 0.001
Identities = 27/82 (32%), Positives = 43/82 (52%)
Frame = +1
Query: 241 NQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASG 420
NQ TE+ DS +K S R H +E++RR I + +LQEL+P C +TD
Sbjct: 261 NQGTEEARDSTSSKRS------RAAIMHKLSERRRRQKINEMMKALQELLPRCTKTD--- 311
Query: 421 YKHSKAAVLQKSIDYIQYLLQQ 486
++++L I+Y++ L Q
Sbjct: 312 ----RSSMLDDVIEYVKSLQSQ 329
>At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 413
Score = 39.9 bits (89), Expect = 0.001
Identities = 27/82 (32%), Positives = 43/82 (52%)
Frame = +1
Query: 241 NQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASG 420
NQ TE+ DS +K S R H +E++RR I + +LQEL+P C +TD
Sbjct: 261 NQGTEEARDSTSSKRS------RAAIMHKLSERRRRQKINEMMKALQELLPRCTKTD--- 311
Query: 421 YKHSKAAVLQKSIDYIQYLLQQ 486
++++L I+Y++ L Q
Sbjct: 312 ----RSSMLDDVIEYVKSLQSQ 329
>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
protein similar to A. thaliana putative protein
F6I18.110, GenBank accession number 2980768
Length = 310
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/57 (36%), Positives = 36/57 (63%)
Frame = +1
Query: 316 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
+ H+ AE+ RR+ I + +LQELVPT +TD +AA++ + +DY+++L Q
Sbjct: 155 DPHSIAERLRRERIAERIRALQELVPTVNKTD-------RAAMIDEIVDYVKFLRLQ 204
>At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +1
Query: 313 REAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
R H++ EQ+RR I + + SL +++P Q + K KA+ L + I+YI +L ++
Sbjct: 35 RSKHSETEQRRRSKINERFQSLMDIIPQNQ----NDQKRDKASFLLEVIEYIHFLQEK 88
>At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 485
Score = 39.1 bits (87), Expect = 0.002
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Frame = +1
Query: 211 QNIHQTPSS----SNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKG 366
+N Q+P+S SN + S D K + + RR +A H+ AE+ RR+ I +
Sbjct: 268 RNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISER 327
Query: 367 YDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
LQ+LVP C + KA +L + I+Y+Q L +Q
Sbjct: 328 MKFLQDLVPGCNKVT------GKAVMLDEIINYVQSLQRQ 361
>At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 486
Score = 39.1 bits (87), Expect = 0.002
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Frame = +1
Query: 211 QNIHQTPSS----SNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKG 366
+N Q+P+S SN + S D K + + RR +A H+ AE+ RR+ I +
Sbjct: 269 RNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISER 328
Query: 367 YDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
LQ+LVP C + KA +L + I+Y+Q L +Q
Sbjct: 329 MKFLQDLVPGCNKVT------GKAVMLDEIINYVQSLQRQ 362
>At5g58010.1 68418.m07258 basic helix-loop-helix (bHLH) family
protein bHLH transcription factor GBOF-1, Tulipa
gesneriana, EMBL:AF185269; contains Pfam profile
PF00010: Helix-loop-helix DNA-binding domain
Length = 297
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +1
Query: 316 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
+ H+ AE+ RR+ I + SLQELVP +TD KA++L + I+Y+++L Q
Sbjct: 108 DPHSIAERLRRERIAERMKSLQELVPNTNKTD-------KASMLDEIIEYVRFLQLQ 157
>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain
Length = 478
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 229 PSSSNQNTEDEDDSGDNKASALSFKERRR--EAHTQAEQKRRDAIKKGYDSLQELVPTCQ 402
P++ ++ E+ G +A + ++R R E H AE++RR+ I + +LQ+L+P C
Sbjct: 227 PATESKLKAREETHGTEEARGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCN 286
Query: 403 QTDA 414
+ ++
Sbjct: 287 KVES 290
>At4g27120.2 68417.m03898 expressed protein
Length = 298
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +1
Query: 193 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERR---REAHTQAEQKRRDAIKK 363
G+S S N+ + S S EDED++G +A A KE++ REA QAE+ R++
Sbjct: 64 GASSSTSNVQENGSGSED--EDEDEAGGTQARASKKKEKKRQEREAQRQAEEATRESRNT 121
Query: 364 GYDSLQEL 387
D E+
Sbjct: 122 KQDWYAEM 129
>At4g27120.1 68417.m03897 expressed protein
Length = 298
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +1
Query: 193 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERR---REAHTQAEQKRRDAIKK 363
G+S S N+ + S S EDED++G +A A KE++ REA QAE+ R++
Sbjct: 64 GASSSTSNVQENGSGSED--EDEDEAGGTQARASKKKEKKRQEREAQRQAEEATRESRNT 121
Query: 364 GYDSLQEL 387
D E+
Sbjct: 122 KQDWYAEM 129
>At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 409
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 313 REAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
R H+ EQ+RR I + L++L+P Q K KA+ L + I+YIQ+L ++
Sbjct: 158 RSKHSATEQRRRSKINDRFQMLRQLIPNSDQ------KRDKASFLLEVIEYIQFLQEK 209
>At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 456
Score = 38.3 bits (85), Expect = 0.003
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Frame = +1
Query: 205 SIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKE------RRREA---HTQAEQKRRDAI 357
S + I + S + + +++GD S +K+ RR +A H+ AE+ RR+ I
Sbjct: 221 SSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKI 280
Query: 358 KKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
+ LQ+LVP C + KA +L + I+Y+Q L +Q
Sbjct: 281 SERMKLLQDLVPGCNKVT------GKALMLDEIINYVQSLQRQ 317
>At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 328
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/82 (26%), Positives = 45/82 (54%)
Frame = +1
Query: 241 NQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASG 420
+Q +++ + G +A S + + H AE+KRR+ + + + +L LVP ++ D
Sbjct: 126 HQKSDEFNRKGTKRAQPFSRNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMD--- 182
Query: 421 YKHSKAAVLQKSIDYIQYLLQQ 486
KA+VL ++ +I+YL ++
Sbjct: 183 ----KASVLGDALKHIKYLQER 200
>At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 335
Score = 37.9 bits (84), Expect = 0.004
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Frame = +1
Query: 193 GSSGSIQNI-HQTPSSSNQNTEDEDDSGDN--KASALSFKERRREA---HTQAEQKRRDA 354
GS+ SI+ + H+ N + D K + + RR +A H+ AE+ RR+
Sbjct: 134 GSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREK 193
Query: 355 IKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
I + LQ+LVP C + KA +L + I+Y+Q L +Q
Sbjct: 194 ISERMKFLQDLVPGCDKIT------GKAGMLDEIINYVQSLQRQ 231
>At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) /
reduced phytochrome signaling (REP1) / basic
helix-loop-helix FBI1 protein (FBI1) / reduced
sensitivity to far-red light (RSF1) / bHLH protein 26
(BHLH026) (BHLH26) identical to SP|Q9FE22 Long hypocotyl
in far-red 1 (bHLH-like protein HFR1) (Reduced
phytochrome signaling) (Basic helix-loop-helix FBI1
protein) (Reduced sensitivity to far-red light)
[Arabidopsis thaliana]
Length = 292
Score = 37.5 bits (83), Expect = 0.006
Identities = 24/93 (25%), Positives = 43/93 (46%)
Frame = +1
Query: 208 IQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQEL 387
++N H+ P DD + + R+ + ++K + ++K LQ+L
Sbjct: 105 LRNKHENPKKRRIQVLSSDDESEEFTREVPSVTRKGSKRRRRDEKMSNKMRK----LQQL 160
Query: 388 VPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
VP C +TD K +VL K+I+Y++ L Q
Sbjct: 161 VPNCHKTD-------KVSVLDKTIEYMKNLQLQ 186
>At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 210
Score = 37.1 bits (82), Expect = 0.008
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = +1
Query: 196 SSGSIQNIHQTPSSSNQNTE--DEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGY 369
S G++ ++ S + Q+ + SG + ++L + + H +E+KRR I +
Sbjct: 55 SGGAVSSVGYGVSETGQDKYAFEHKRSGAKQRNSLK-RNIDAQFHNLSEKKRRSKINEKM 113
Query: 370 DSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
+LQ+L+P +TD KA++L ++I+Y++ L Q
Sbjct: 114 KALQKLIPNSNKTD-------KASMLDEAIEYLKQLQLQ 145
>At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family
protein
Length = 343
Score = 37.1 bits (82), Expect = 0.008
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Frame = +1
Query: 235 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQELVPTCQQ 405
S TE + + + + RR +A H+ AE+ RR+ I + LQ+LVP C +
Sbjct: 115 SLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK 174
Query: 406 TDASGYKHSKAAVLQKSIDYIQYLLQQ 486
KA VL + I+YIQ L +Q
Sbjct: 175 V------IGKALVLDEIINYIQSLQRQ 195
>At1g59640.1 68414.m06707 basic helix-loop-helix (bHLH) family
protein
Length = 264
Score = 37.1 bits (82), Expect = 0.008
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Frame = +1
Query: 235 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQELVPTCQQ 405
S TE + + + + RR +A H+ AE+ RR+ I + LQ+LVP C +
Sbjct: 115 SLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK 174
Query: 406 TDASGYKHSKAAVLQKSIDYIQYLLQQ 486
KA VL + I+YIQ L +Q
Sbjct: 175 V------IGKALVLDEIINYIQSLQRQ 195
>At3g57800.2 68416.m06443 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; supported by full-length cDNA
gi:20127059
Length = 379
Score = 36.7 bits (81), Expect = 0.010
Identities = 24/85 (28%), Positives = 43/85 (50%)
Frame = +1
Query: 232 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTD 411
SS+ +N E++ + + + ++H+ AE+ RR+ I LQELVP C +
Sbjct: 185 SSTKKNKSSEENEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQ 244
Query: 412 ASGYKHSKAAVLQKSIDYIQYLLQQ 486
+ A VL + I+++Q L +Q
Sbjct: 245 GT------ALVLDEIINHVQSLQRQ 263
>At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 304
Score = 36.7 bits (81), Expect = 0.010
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +1
Query: 271 GDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQ 450
G +A +L+ + + H AE+KRR+ + + + +L L+P ++ D KA+VL
Sbjct: 110 GTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMD-------KASVLG 162
Query: 451 KSIDYIQYL 477
+I +I+YL
Sbjct: 163 DAIKHIKYL 171
>At5g62610.1 68418.m07857 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 281
Score = 36.3 bits (80), Expect = 0.014
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Frame = +1
Query: 169 ICNMYSRCGSSGSIQNIHQTPSSSN-QNTEDEDDSGDNKASALSFKERRREA---HTQAE 336
+C S G GS++ +T S ++ + + + + RR +A H+ AE
Sbjct: 110 LCGSESGNGD-GSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHSLAE 168
Query: 337 QKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
+ RR+ I + +LQ+++P C + KA VL + I+YIQ L +Q
Sbjct: 169 RARREKISEKMTALQDIIPGCNKI------IGKALVLDEIINYIQSLQRQ 212
>At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 327
Score = 35.9 bits (79), Expect = 0.018
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Frame = +1
Query: 196 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKG 366
SSG + + SS + + +S +K + + RR +A H+ AE+ RR+ I
Sbjct: 153 SSGKRKEREKKVKSSTKKNKSSVES--DKLPYVHVRARRGQATDNHSLAERARREKINAR 210
Query: 367 YDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
LQELVP C + + A VL + I+++Q L +Q
Sbjct: 211 MKLLQELVPGCDKIQGT------ALVLDEIINHVQTLQRQ 244
>At5g50915.2 68418.m06314 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 286
Score = 34.7 bits (76), Expect = 0.042
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +1
Query: 316 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
++H+ AE+ RR+ I + +LQ LVP C + KA +L + I+Y+Q L Q
Sbjct: 145 DSHSLAERVRREKISERMRTLQNLVPGCDKVT------GKALMLDEIINYVQTLQTQ 195
>At5g50915.1 68418.m06313 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 286
Score = 34.7 bits (76), Expect = 0.042
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +1
Query: 316 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
++H+ AE+ RR+ I + +LQ LVP C + KA +L + I+Y+Q L Q
Sbjct: 145 DSHSLAERVRREKISERMRTLQNLVPGCDKVT------GKALMLDEIINYVQTLQTQ 195
>At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 498
Score = 34.7 bits (76), Expect = 0.042
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 316 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
++H+ AE+ RR+ I + LQ+LVP C + KA +L + I+Y+Q L +Q
Sbjct: 310 DSHSLAERVRREKIGERMKLLQDLVPGCNKVT------GKALMLDEIINYVQSLQRQ 360
>At3g57800.1 68416.m06442 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; supported by full-length cDNA
gi:20127059
Length = 426
Score = 34.3 bits (75), Expect = 0.055
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 232 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQ-T 408
SS+ +N E++ + + + ++H+ AE+ RR+ I LQELVP C + T
Sbjct: 185 SSTKKNKSSEENEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKGT 244
Query: 409 DASG 420
D G
Sbjct: 245 DFGG 248
>At4g01720.1 68417.m00223 WRKY family transcription factor similar
to wild oat DNA-binding protein ABF2, GenBank accession
number Z48431
Length = 489
Score = 33.9 bits (74), Expect = 0.073
Identities = 20/81 (24%), Positives = 31/81 (38%)
Frame = +1
Query: 193 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 372
GSSG + S ++ D DD + S L + R + D + + Y+
Sbjct: 69 GSSGFNDGLGLVNSCHGTSSNDGDDKTKTQISRLKLELERLHEENHKLKHLLDEVSESYN 128
Query: 373 SLQELVPTCQQTDASGYKHSK 435
LQ V +QT G H +
Sbjct: 129 DLQRRVLLARQTQVEGLHHKQ 149
>At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family
protein bHLH protein, Arabidopsis thaliana,
PATCHX:E255557
Length = 589
Score = 32.7 bits (71), Expect = 0.17
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +1
Query: 322 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQXXXXX 501
H +AE++RR+ + + + SL+ +VP + D KA++L +I YI L +
Sbjct: 417 HVEAERQRREKLNQRFYSLRAVVPNVSKMD-------KASLLGDAISYISELKSKLQKAE 469
Query: 502 XXXNALQK 525
LQK
Sbjct: 470 SDKEELQK 477
>At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763
Dehydrin ERD14 {Arabidopsis thaliana}
Length = 185
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/63 (26%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +1
Query: 208 IQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGY-DSLQE 384
++ +H++ SSS+ ++E+E G+ + K+ +++ T+ E K + KKG+ + L+E
Sbjct: 71 LEKLHRSDSSSSSSSEEEGSDGEKRKK----KKEKKKPTTEVEVKEEE--KKGFMEKLKE 124
Query: 385 LVP 393
+P
Sbjct: 125 KLP 127
>At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 223
Score = 32.7 bits (71), Expect = 0.17
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +1
Query: 316 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
++H+ AE+ RR+ I + LQ+LVP C + A G A +L IDY++ L Q
Sbjct: 113 DSHSLAERVRREKINERLKCLQDLVPGCYK--AMG----MAVMLDVIIDYVRSLQNQ 163
>At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family
protein
Length = 592
Score = 31.9 bits (69), Expect = 0.29
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +1
Query: 322 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQXXXXX 501
H +AE++RR+ + + + SL+ +VP + D KA++L +I YI L +
Sbjct: 416 HVEAERQRREKLNQRFYSLRAVVPNVSKMD-------KASLLGDAISYINELKSKLQQAE 468
Query: 502 XXXNALQK 525
+QK
Sbjct: 469 SDKEEIQK 476
>At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 254
Score = 31.9 bits (69), Expect = 0.29
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 274 DNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQK 453
D+ + E +H AE++RRD I +L++LVP + D KAA+L
Sbjct: 51 DDCVGGIEKAESLSRSHRLAEKRRRDRINSHLTALRKLVPNSDKLD-------KAALLAT 103
Query: 454 SIDYIQYLLQQ 486
I+ ++ L Q+
Sbjct: 104 VIEQVKELKQK 114
>At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; PMID: 12679534
Length = 428
Score = 31.5 bits (68), Expect = 0.39
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Frame = +1
Query: 226 TPSSSNQNTEDEDDSGDNKASALSF-KERRREAHTQ-------AEQKRRDAIKKGYDSLQ 381
T N DE+++ + + F KE RR+ + E++RR + + Y++L+
Sbjct: 175 TTQRDESNVGDENNNAQFDSGIIEFSKEIRRKGRGKRKNKPFTTERERRCHLNERYEALK 234
Query: 382 ELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 477
L+P+ + D +A++LQ IDYI L
Sbjct: 235 LLIPSPSKGD-------RASILQDGIDYINEL 259
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 31.5 bits (68), Expect = 0.39
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 160 ITDICNMYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDN 279
+ DI S G+S S QN Q SSS Q +D+DD D+
Sbjct: 770 VLDILQSLSNQGTSNSTQN-GQMASSSQQPNDDDDDDDDD 808
>At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 258
Score = 31.5 bits (68), Expect = 0.39
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Frame = +1
Query: 226 TPSSSNQNTED----EDDSGDNKASALSFKERRREAHTQAE-------QKRRDAIKKGYD 372
T SN N D + S D KAS S K + R A +KRR+ I +
Sbjct: 135 TVDESNTNWVDGQSLSNSSDDEKASVTSVKGKTRATKGTATDPQSLYARKRREKINERLK 194
Query: 373 SLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
+LQ LVP + D S +L++++ Y+++L Q
Sbjct: 195 TLQNLVPNGTKVDIS-------TMLEEAVHYVKFLQLQ 225
>At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 590
Score = 31.5 bits (68), Expect = 0.39
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Frame = +1
Query: 262 DDSGDNKASALSFKER--RREA--HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKH 429
D+SG+N+ + R EA H +AE++RR+ + + + +L+ +VP + D
Sbjct: 410 DESGNNRPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMD------ 463
Query: 430 SKAAVLQKSIDYIQYL 477
KA++L ++ YI L
Sbjct: 464 -KASLLGDAVSYINEL 478
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/77 (18%), Positives = 40/77 (51%)
Frame = +1
Query: 223 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQ 402
++ + ++ ED+ + DNK+ ++ ++ H +++ ++++ KK + L++ +
Sbjct: 1072 ESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKK 1131
Query: 403 QTDASGYKHSKAAVLQK 453
+ D + K S+ L K
Sbjct: 1132 KEDKNEKKKSQHVKLVK 1148
>At3g20640.1 68416.m02612 ethylene-responsive protein -related
contains similarity to ethylene-inducible ER33 protein
[Lycopersicon esculentum] gi|5669656|gb|AAD46413
Length = 454
Score = 31.1 bits (67), Expect = 0.51
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +1
Query: 232 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTD 411
S ++ +E G N + + + A KR++ + +LQ+LV +TD
Sbjct: 309 SEIRDSSSNEVKRGGNDHQPAAKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTD 368
Query: 412 ASGYKHSKAAVLQKSIDYIQYLLQQ 486
A A+VL ++I+YI++L QQ
Sbjct: 369 A-------ASVLSEAIEYIKFLHQQ 386
>At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 347
Score = 31.1 bits (67), Expect = 0.51
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Frame = +1
Query: 214 NIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR------RDAIKKGYDS 375
N TP + ED+ + +A + S K R ++ + A++ R K ++
Sbjct: 227 NFVTTPQIISTRLEDKTKNLKTRAQSESLK-RAKDNESAAKKPRVTTPSPLPTFKVRKEN 285
Query: 376 LQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
L++ + + QQ + K A+VLQ++I+YI++L Q
Sbjct: 286 LRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQ 322
>At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 393
Score = 31.1 bits (67), Expect = 0.51
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Frame = +1
Query: 214 NIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR------RDAIKKGYDS 375
N TP + ED+ + +A + S K R ++ + A++ R K ++
Sbjct: 227 NFVTTPQIISTRLEDKTKNLKTRAQSESLK-RAKDNESAAKKPRVTTPSPLPTFKVRKEN 285
Query: 376 LQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
L++ + + QQ + K A+VLQ++I+YI++L Q
Sbjct: 286 LRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQ 322
>At1g25310.1 68414.m03141 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 145
Score = 31.1 bits (67), Expect = 0.51
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 325 TQAEQKRRDAIKKGYDSLQELVPTCQQTD 411
T ++KRR+ I++ ++L+E+ P C Q+D
Sbjct: 72 TLLKKKRRERIRRQLETLKEITPNCPQSD 100
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 31.1 bits (67), Expect = 0.51
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +1
Query: 223 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQ 402
QTPS S Q +++ D A + KE E TQAE+ + + K+ ++E V +
Sbjct: 8 QTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKTEQAKE-ESPVEEAVSVVE 66
Query: 403 QTDASGYKHSKAA 441
+ S + ++ A
Sbjct: 67 EKSESAPESTEVA 79
>At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;annotation temporarily based on
supporting cDNA gi|17224394|gb|AF246291.1|AF246291
Length = 637
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +1
Query: 322 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 477
H E+KRR+ + + + +L++++P+ + D K ++L +I+Y+Q L
Sbjct: 442 HAVLEKKRREKLNERFMTLRKIIPSINKID-------KVSILDDTIEYLQEL 486
>At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 307
Score = 30.3 bits (65), Expect = 0.89
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Frame = +1
Query: 169 ICNMYSRCGSSGSIQNIHQTP-SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR 345
I N+ SR S+ ++ P + N + SG N ++ + A + R
Sbjct: 160 IVNIGSRHESTSPKLAGNKRPFTGENTQLSKKPSSGTNGKIKPKATTSPKDPQSLAAKNR 219
Query: 346 RDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
R+ I + LQELVP G K +L+K+I Y+++L Q
Sbjct: 220 RERISERLKVLQELVPN-------GTKVDLVTMLEKAIGYVKFLQVQ 259
>At4g29930.1 68417.m04258 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 254
Score = 30.3 bits (65), Expect = 0.89
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +1
Query: 331 AEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
+E+ RR + + +L+ +VP + D KA+V++ SIDY+Q L+ Q
Sbjct: 58 SERNRRQKLNQRLFALRSVVPNISKLD-------KASVIKDSIDYMQELIDQ 102
>At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family
protein similar to the myc family of helix-loop-helix
transcription factors; contains Pfam profile PF00010:
Helix-loop-helix DNA-binding domain; PMID: 12679534
Length = 423
Score = 30.3 bits (65), Expect = 0.89
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +1
Query: 289 ALSFKERRREA---HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSI 459
A + KE+ A H +AE++RR+ + + +L+ +VP + D KA++L ++
Sbjct: 236 AAATKEKHHPAVLSHVEAEKQRREKLNHRFYALRAIVPKVSRMD-------KASLLSDAV 288
Query: 460 DYIQYL 477
YI+ L
Sbjct: 289 SYIESL 294
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 229 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELV 390
P N N DED S DN+ S T A + ++ K+G D +++++
Sbjct: 377 PDCLNDNENDEDGSDDNEESENEDGSSDETEFTSASDEMIESFKEGKDIMKDVM 430
>At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 566
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/55 (29%), Positives = 33/55 (60%)
Frame = +1
Query: 322 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
H +AE++RR+ + + + +L+ +VP + D KA++L +I YI+ L ++
Sbjct: 396 HVEAERQRREKLNQRFYALRSVVPNISKMD-------KASLLGDAISYIKELQEK 443
>At2g44200.1 68415.m05500 expressed protein
Length = 493
Score = 30.3 bits (65), Expect = 0.89
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 220 HQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIK 360
HQ SSS Q ++ E+DSG+ S ++ H + ++ R ++
Sbjct: 191 HQKQSSSRQRSDSEEDSGEENNGRKSHHQKTSGTHDRHYERPRSDLE 237
>At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH
protein contains Pfam profile PF00010: Helix-loop-helix
DNA-binding domain; PMID: 12679534; putative bHLH084
transcription factor
Length = 328
Score = 30.3 bits (65), Expect = 0.89
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +1
Query: 259 EDDSGDNKASALSFKERR-REAHTQAE----QKRRDAIKKGYDSLQELVPTCQQTDASGY 423
++D D+KA L+ K R R A T + +KRR+ I + LQ LVP + D S
Sbjct: 222 KEDGEDSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVDIS-- 279
Query: 424 KHSKAAVLQKSIDYIQYLLQQ 486
+L++++ Y+++L Q
Sbjct: 280 -----TMLEEAVQYVKFLQLQ 295
>At1g63650.2 68414.m07202 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor (JAF13)
GB:AAC39455 [Petunia x hybrida]; contains Pfam profile:
PF00010 Helix-loop-helix DNA-binding domain
Length = 596
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +1
Query: 322 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 477
H +E+KRR+ + + + +L+ ++P+ + D K ++L +I+Y+Q L
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKID-------KVSILDDTIEYLQDL 450
>At1g63650.1 68414.m07201 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor (JAF13)
GB:AAC39455 [Petunia x hybrida]; contains Pfam profile:
PF00010 Helix-loop-helix DNA-binding domain
Length = 596
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +1
Query: 322 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 477
H +E+KRR+ + + + +L+ ++P+ + D K ++L +I+Y+Q L
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKID-------KVSILDDTIEYLQDL 450
>At3g29075.1 68416.m03637 glycine-rich protein
Length = 294
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 193 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 372
G G I++ + PS ED+ D G K S + + ++ + ++K++D K G +
Sbjct: 121 GYGGRIESDYVKPSYGGH--EDDGDDGHKKHSGKDYDDGDEKSKKKEKEKKKDKKKDGNN 178
Query: 373 S 375
S
Sbjct: 179 S 179
>At3g25710.1 68416.m03199 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 344
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = +1
Query: 316 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
++H++AE++RR+ I L+ ++P +TD KA++L + I +++ L +Q
Sbjct: 134 KSHSEAERRRRERINTHLAKLRSILPNTTKTD-------KASLLAEVIQHMKELKRQ 183
>At1g68810.1 68414.m07866 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 368
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/57 (26%), Positives = 34/57 (59%)
Frame = +1
Query: 316 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
++H++AE++RR+ I L+ ++P +TD KA++L + I +++ L ++
Sbjct: 176 KSHSEAERRRRERINNHLAKLRSILPNTTKTD-------KASLLAEVIQHVKELKRE 225
>At5g63720.1 68418.m07998 hypothetical protein
Length = 492
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +1
Query: 223 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGY-----DSLQEL 387
QTPS++ +EDE+ S + S + E TQAE + Y DS+ E+
Sbjct: 272 QTPSATGSESEDEEVSTSQEYSGETGSSSGSEWETQAENDTESKSESSYPPQNDDSVSEV 331
Query: 388 VPTCQQTD 411
+ TD
Sbjct: 332 STSPPHTD 339
>At5g43650.1 68418.m05335 basic helix-loop-helix (bHLH) family
protein similar to unknown protein (pir||T04030)
Length = 247
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = +1
Query: 274 DNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQK 453
+ K + ++ ++ R H E+ RR+ K+ Y +L L+P + D K ++++K
Sbjct: 74 EEKKNTVAPEKERSRRHMLKERTRREKQKQSYLALHSLLPFATKND-------KNSIVEK 126
Query: 454 SIDYIQYL 477
++D I L
Sbjct: 127 AVDEIAKL 134
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/61 (27%), Positives = 21/61 (34%)
Frame = +1
Query: 247 NTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYK 426
N D D G K + +ER RE EQ DA S E + G+
Sbjct: 20 NNNDNSDKGKEKEHDVRIRERERERDRAREQLNMDAAAAAARSADEDDDNDSEDGNGGFM 79
Query: 427 H 429
H
Sbjct: 80 H 80
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/61 (27%), Positives = 21/61 (34%)
Frame = +1
Query: 247 NTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYK 426
N D D G K + +ER RE EQ DA S E + G+
Sbjct: 93 NNNDNSDKGKEKEHDVRIRERERERDRAREQLNMDAAAAAARSADEDDDNDSEDGNGGFM 152
Query: 427 H 429
H
Sbjct: 153 H 153
>At2g45130.1 68415.m05616 SPX (SYG1/Pho81/XPR1) domain-containing
protein weak similarity to NUC-2 [Neurospora crassa]
GI:1399532, xenotropic and polytropic murine leukemia
virus receptor [Mus musculus castaneus] GI:6093320;
contains Pfam profile PF03105: SPX domain
Length = 245
Score = 29.1 bits (62), Expect = 2.1
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +2
Query: 131 DKILRFQLYKSLIYATCTLGVVAVGLYKTSIKLRRLLIKIQKTKMTVEIIRHRHLVLKKG 310
DK LR++ K+LI + + + VGL I Q+ II H+ L +
Sbjct: 20 DKFLRYKELKNLISSPAPVESIFVGLLNAEIDKFNAFFVEQEEDF---IIHHKELQYR-- 74
Query: 311 EEKLTPKQNRNEEM------PLRKDMIHF 379
++L K N+EM +RKD+++F
Sbjct: 75 IQRLVEKCGHNDEMSRENISEIRKDIVNF 103
>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 313 REAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
++ + A + RR+ I + LQELVP G K +L+K+I Y+++L Q
Sbjct: 203 KDPQSLAAKNRRERISERLKILQELVPN-------GTKVDLVTMLEKAISYVKFLQVQ 253
>At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family
protein / F-box family protein contains Pfam profiles:
PF00646 F-box domain, PF00010 helix-loop-helix
DNA-binding domain
Length = 828
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +1
Query: 238 SNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDAS 417
S N E +D + +N K+ + AE++RR + L+ +VP + D
Sbjct: 621 SGLNYESDDHNTNNNKGK---KKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMD-- 675
Query: 418 GYKHSKAAVLQKSIDYIQYLLQQ 486
+A++L +IDY++ LLQ+
Sbjct: 676 -----RASILGDAIDYLKELLQR 693
>At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 467
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +1
Query: 310 RREA--HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYI 468
R EA H +AE++RR+ + + + +L+ +VP + D KA++L +I YI
Sbjct: 315 REEALNHVEAERQRREKLNQRFYALRAVVPNISKMD-------KASLLADAITYI 362
>At3g30725.1 68416.m03909 expressed protein ; expression supported
by MPSS
Length = 111
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 220 HQTPSSSNQNT--EDEDDSGDNKASALS 297
HQ PSSS+ N ++EDD GD A ++
Sbjct: 39 HQKPSSSSNNNHMDEEDDVGDKDAKPIT 66
>At2g22770.1 68415.m02701 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 314
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 322 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
H AE+KRR + + +L L+P ++TD KA VL+ +I +++ L ++
Sbjct: 127 HVLAERKRRQKLNERLIALSALLPGLKKTD-------KATVLEDAIKHLKQLQER 174
>At2g20310.1 68415.m02372 expressed protein
Length = 430
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 163 TDICNMYSRCGSSGSIQNIHQTPSSSNQNTEDEDD 267
TDI + S G + + ++ P+SSNQ ED+DD
Sbjct: 45 TDIVEVLSEV--RGGVNSQYRKPNSSNQALEDDDD 77
>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 852
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 226 TPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPT 396
TP S+ + EDD G++K S ERRR+ + +K + + + Y+ +E T
Sbjct: 691 TPGSNKRKDRVEDDDGESKPS-----ERRRKKGGKRRKKDKSSRARHYEDDEEEAAT 742
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 226 TPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPT 396
TP S+ + EDD G++K S ERRR+ + +K + + + Y+ +E T
Sbjct: 903 TPGSNKRKDRVEDDDGESKPS-----ERRRKKGGKRRKKDKSSRARHYEDDEEEAAT 954
>At4g09820.1 68417.m01611 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 379
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/75 (22%), Positives = 36/75 (48%)
Frame = +1
Query: 319 AHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQXXXX 498
+H AE++RR+ + + + +L+ +VP + D K ++L +I Y+ +L ++
Sbjct: 224 SHVVAERRRREKLNEKFITLRSMVPFVTKMD-------KVSILGDTIAYVNHLRKRVHEL 276
Query: 499 XXXXNALQKGCGRAC 543
+ Q R C
Sbjct: 277 ENTHHEQQHKRTRTC 291
>At3g30775.1 68416.m03933 proline oxidase, mitochondrial / osmotic
stress-responsive proline dehydrogenase (POX) (PRO1)
(ERD5) nearly identical to SP|P92983 Proline oxidase,
mitochondrial precursor (EC 1.5.3.-) (Osmotic stress-
induced proline dehydrogenase) [Arabidopsis thaliana];
identical to cDNA proline oxidase precursor GI:1817543
Length = 499
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +1
Query: 331 AEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQY 474
AE++R ++ + +QE+ CQ+++ ++ +LQ +IDY+ Y
Sbjct: 252 AEEERE--LEAAHGRIQEICRKCQESNVPLLIDAEDTILQPAIDYMAY 297
>At2g31730.1 68415.m03874 ethylene-responsive protein, putative
similar to ethylene-inducible ER33 protein [Lycopersicon
esculentum] gi|5669656|gb|AAD46413
Length = 153
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +1
Query: 274 DNKASALSFKERRREAHTQAE-----QKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKA 438
+ K + S ++ + + H ++ ++R+D + + +LQ+LV +TD A
Sbjct: 13 ETKRNVYSLEDNKIKRHKSSDLSFSSKERKDKLAERISALQQLVSPYGKTDT-------A 65
Query: 439 AVLQKSIDYIQYLLQQ 486
+VL + + YIQ+L +Q
Sbjct: 66 SVLLEGMQYIQFLQEQ 81
>At2g28160.1 68415.m03420 basic helix-loop-helix (bHLH) family
protein
Length = 318
Score = 28.3 bits (60), Expect = 3.6
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Frame = +1
Query: 253 EDEDD--SGDNKASALSFKERRREAHTQ------AEQKRRDAIKKGYDSLQELVPTCQQT 408
EDE+D GD+ ++ + + R+ T +E++RR +K +L+ LVP +
Sbjct: 101 EDEEDYNDGDDSSATTTNNDGTRKTKTDRSRTLISERRRRGRMKDKLYALRSLVPNITKM 160
Query: 409 DASGYKHSKAAVLQKSIDYIQYLLQQ 486
D KA+++ ++ Y+Q L Q
Sbjct: 161 D-------KASIVGDAVLYVQELQSQ 179
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/88 (21%), Positives = 33/88 (37%)
Frame = +1
Query: 193 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 372
GS S H S + +DD +++K+R H IK+ +
Sbjct: 800 GSMPSPGTTHTGSSRRQSSRATDDDPASVSREVMAYKQRIGGLHFSKSASPASVIKRNGN 859
Query: 373 SLQELVPTCQQTDASGYKHSKAAVLQKS 456
E P + D + YK S ++ + +S
Sbjct: 860 HSHEAKPFSRVIDNNCYKSSSSSQMIES 887
>At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein
(RAP-1) identical to bHLH protein GB:CAA67885 GI:1465368
from [Arabidopsis thaliana]
Length = 623
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +1
Query: 322 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 477
H +AE++RR+ + + + +L+ +VP + D KA++L +I YI L
Sbjct: 453 HVEAERQRREKLNQRFYALRAVVPNVSKMD-------KASLLGDAIAYINEL 497
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 208 IQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAE 336
+++IH + S +Q+ +DD+G++ S+L E + E H ++
Sbjct: 593 LEHIHSS-KSEDQSVYSDDDAGESGESSLHRIEAKEEEHISSD 634
>At3g21480.1 68416.m02710 transcription activation
domain-interacting protein-related contains weak
similarity to Pax transcription activation domain
interacting protein PTIP (GI:4336734) [Mus musculus]
Length = 1045
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 241 NQNTEDEDDSGDNKASALSFKERRREAHTQAE 336
N + D DDSG + LS +E R++A+ + +
Sbjct: 128 NSDLSDSDDSGSKAETVLSSEENRQDANEKVK 159
>At1g17820.1 68414.m02206 expressed protein
Length = 803
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = +1
Query: 193 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 372
GSS + + Q+PS S ++E++D G + + ++ + E+KRR +K
Sbjct: 736 GSSREVSAV-QSPSRSVASSEEDDSRGKKQGRRARMLDLGKKMGEKLEEKRRHMEEKSRQ 794
Query: 373 SLQEL 387
++++
Sbjct: 795 IVEKM 799
>At5g41090.1 68418.m04995 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to unknown protein (emb|CAB88055.1)
Length = 212
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 214 NIHQTPSSSNQNTEDEDDSGDNKASAL-SFKER 309
N+H S S E+ED+S D A +L S KE+
Sbjct: 168 NLHIVESESESEEEEEDESVDKPAESLDSVKEK 200
>At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 352
Score = 27.5 bits (58), Expect = 6.3
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Frame = +1
Query: 253 EDEDDSGDNKASALSFKERRREAHTQAE-------QKRRDAIKKGYDSLQELVPTCQQTD 411
ED D+ + AL+ + R + A +KRR+ I + LQ LVP + D
Sbjct: 247 EDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVD 306
Query: 412 ASGYKHSKAAVLQKSIDYIQYLLQQ 486
S +L++++ Y+++L Q
Sbjct: 307 IS-------TMLEEAVHYVKFLQLQ 324
>At4g04890.1 68417.m00712 homeobox-leucine zipper protein
protodermal factor 2 (PDF2) identical to GP|14276060|
protodermal factor2 (GI:14276060)
Length = 743
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 251 QKTKMTVEIIRHRHLVLKKGEEKLTPKQNRNEE 349
++T+M + RH + +LK +KL + NR +E
Sbjct: 113 KRTQMKAQSERHENQILKSDNDKLRAENNRYKE 145
>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
protein similar to Mrs16p (GI:2737884) [Saccharomyces
cerevisiae]; weak similarity to ataxin-2 related protein
(GI:1679686) [Homo sapiens]
Length = 595
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 196 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDA 354
SS +N+ Q+ S+S Q ++D +G N S E+RR+ + + R A
Sbjct: 330 SSRKNKNVDQSCSTSKQQSKDFPAAGSN-ISESQLDEQRRKNNEEVSHNNRSA 381
>At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 253
Score = 27.5 bits (58), Expect = 6.3
Identities = 28/103 (27%), Positives = 46/103 (44%)
Frame = +1
Query: 178 MYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAI 357
M S CGSS S + + S T +D + +AL H +AE++RR+ I
Sbjct: 34 MQSLCGSSSSTSSYYPLAISGIGETMAQDRA----LAAL-------RNHKEAERRRRERI 82
Query: 358 KKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 486
+ L+ ++ +TD KA +L K + ++ L QQ
Sbjct: 83 NSHLNKLRNVLSCNSKTD-------KATLLAKVVQRVRELKQQ 118
>At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein
gar2-related contains weak similarity to
Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
pombe]
Length = 439
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +1
Query: 175 NMYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHT--QAEQKRR 348
N C + G I + S NQ+ D + S L KE+R T + E ++
Sbjct: 242 NDSKECLTLGDILSREDEQKSLNQDNISSDSHEEQSPSQLQDKEKRSLETTAIETELEKT 301
Query: 349 DAIKKGYDSLQELVPTCQQ 405
+ K+G + L + T Q
Sbjct: 302 EEPKQGEEKLSSVSTTTSQ 320
>At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein
gar2-related contains weak similarity to
Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
pombe]
Length = 439
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +1
Query: 175 NMYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHT--QAEQKRR 348
N C + G I + S NQ+ D + S L KE+R T + E ++
Sbjct: 242 NDSKECLTLGDILSREDEQKSLNQDNISSDSHEEQSPSQLQDKEKRSLETTAIETELEKT 301
Query: 349 DAIKKGYDSLQELVPTCQQ 405
+ K+G + L + T Q
Sbjct: 302 EEPKQGEEKLSSVSTTTSQ 320
>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 879
Score = 27.5 bits (58), Expect = 6.3
Identities = 28/110 (25%), Positives = 50/110 (45%)
Frame = +2
Query: 188 GVVAVGLYKTSIKLRRLLIKIQKTKMTVEIIRHRHLVLKKGEEKLTPKQNRNEEMPLRKD 367
G ++ + T +R+LL KI +V+ I R + K +E+L P+ + L
Sbjct: 584 GAESIKIDATRAAIRKLLTKIDVCIRSVDSISSR--IHKLRDEELQPQL-----IQLIHG 636
Query: 368 MIHFKSWFLPVNKLMHQAISTVKLQSFKNP*TISNTYYSKGVVXRKNEMR 517
+I L ++ QAI K++S K T+ N S ++ + E+R
Sbjct: 637 LIRMWRSMLRCHQKQFQAIRESKVRSLKANTTLQNDSGSTAILDLEIELR 686
>At1g57680.2 68414.m06546 expressed protein
Length = 362
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 414 CISLLTGRNQLLK*IISFLNGISSFLFCL 328
C+S+LT ++++ +SFL +S F FC+
Sbjct: 256 CLSVLTAADKIIFEALSFLAFLSLFCFCV 284
>At1g57680.1 68414.m06545 expressed protein
Length = 362
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 414 CISLLTGRNQLLK*IISFLNGISSFLFCL 328
C+S+LT ++++ +SFL +S F FC+
Sbjct: 256 CLSVLTAADKIIFEALSFLAFLSLFCFCV 284
>At1g52160.1 68414.m05887 metallo-beta-lactamase family protein
Length = 890
Score = 27.5 bits (58), Expect = 6.3
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 199 SGSIQNIHQTPSSSNQNTEDEDDSGDNKAS-ALSFKERRREAHTQAEQKRRDAIKKGYDS 375
S S+ + + SSS+ +E +G +S + F +RR E ++K+R+ +K
Sbjct: 36 SFSLSTLFSSSSSSSSMENNEATNGSKSSSNSFVFNKRRAEGFDITDKKKRNLERKS--- 92
Query: 376 LQELVPT 396
Q+L PT
Sbjct: 93 -QKLNPT 98
>At1g30670.1 68414.m03750 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 264
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +1
Query: 301 KERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLL 480
K+R A + A +KRR I + L +L+P Q KH+ A + + Y+++L
Sbjct: 132 KKRELSAQSIAARKRRRRITEKTQELGKLIPGSQ-------KHNTAEMFNAAAKYVKFLQ 184
Query: 481 QQ 486
Q
Sbjct: 185 AQ 186
>At1g14687.1 68414.m01755 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 168
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 232 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIK 360
++ +N E+EDD+ + +RRR++ AEQ R+A+K
Sbjct: 82 TAEERNEEEEDDTEETSTEEKMTVQRRRKSKFTAEQ--REAMK 122
>At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 421
Score = 27.5 bits (58), Expect = 6.3
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = +1
Query: 223 QTPSSSNQNTEDE--DDSGDNKASA-LSFKERRREAHTQAEQKRRDAIKKGYDSLQELVP 393
QTP +D ++ D+KA+ L E + + +E+KRR+ I + L+ +VP
Sbjct: 229 QTPCLIMNKEKDVVVQNANDSKANKKLLPTENFKSKNLHSERKRRERINQAMYGLRAVVP 288
Query: 394 TCQQTDASGYKHSKAAVLQKSIDYIQYLL 480
K +K + ++DYI LL
Sbjct: 289 KIT-------KLNKIGIFSDAVDYINELL 310
>At5g56960.1 68418.m07110 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 466
Score = 27.1 bits (57), Expect = 8.3
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Frame = +1
Query: 175 NMYSRCGSSGSIQNIHQTPSSSNQN--TEDEDDSGDNKASAL-SFKERRREAHTQAEQKR 345
+M +R S + NI+Q + +N T E G S + H +E+KR
Sbjct: 238 SMMTRAMSFYNRLNINQRERFTRENATTHGEGSGGSGGGGRYTSGPSATQLQHMISERKR 297
Query: 346 RDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVL 447
R+ + + + +L+ L+P G K KA+VL
Sbjct: 298 REKLNESFQALRSLLP-------PGTKKDKASVL 324
>At4g29550.1 68417.m04214 expressed protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 358
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +1
Query: 163 TDICNMYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA 321
T + + S CG + +++ P S + T+++DD+ D +S+ KE +A
Sbjct: 13 TTVSHDVSSCGFISKEEWLNKHPPSGSGWTDEDDDNDDVFSSSFISKEELSDA 65
>At4g27290.1 68417.m03916 S-locus protein kinase, putative similar
to S-receptor kinase gi|392557|gb|AAA62232; contains
Pfam domains PF00954: S-locus glycoprotein family,
PF00069: Protein kinase domain and PF01453: Lectin
(probable mannose binding)
Length = 772
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 166 DICNMYSRCGSSGSIQNIHQTPS 234
D C+ Y+ CGS GS NI+++P+
Sbjct: 278 DSCDQYTLCGSYGSC-NINESPA 299
>At3g29763.1 68416.m03760 hypothetical protein
Length = 505
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 269 VEIIRHRHLVLKKGEEKLTPKQNRNEEMPLRKDMIH 376
++ I ++ V+KK K PK N+ P++KD++H
Sbjct: 78 LKYIAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVH 113
>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
protein
Length = 571
Score = 27.1 bits (57), Expect = 8.3
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +1
Query: 232 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTD 411
S + +DEDD K S + + + AE++RR + +L+ LVP + D
Sbjct: 289 SDCSDQIDDEDDPKYKKKSGKGSQAK----NLMAERRRRKKLNDRLYALRSLVPRITKLD 344
Query: 412 ASGYKHSKAAVLQKSIDYIQYL 477
+A++L +I+Y++ L
Sbjct: 345 -------RASILGDAINYVKEL 359
>At1g29570.1 68414.m03616 zinc finger protein-related contains
similarity to zinc finger proteins (CCCH type)
Length = 321
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 205 SIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR-RDAIKKGYDSLQ 381
++Q Q S Q E E++ + + S + +RREA +Q+R RD+I++ Q
Sbjct: 186 NLQEQRQRDSIERQRREAEENLQEQRQRD-SIERQRREAQENLQQQRQRDSIERQRREAQ 244
Query: 382 E 384
E
Sbjct: 245 E 245
>At1g19260.1 68414.m02396 hAT dimerisation domain-containing protein
Length = 769
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 269 VEIIRH---RHLVLKKGEEKLTPKQNRNEEMPLRKDMIH 376
VE++++ ++ V+KK K PK N+ P++KD++H
Sbjct: 207 VELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVH 245
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,158,809
Number of Sequences: 28952
Number of extensions: 219232
Number of successful extensions: 1144
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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