Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O19
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      30   0.17 
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    29   0.52 
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   2.8  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    26   2.8  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   4.8  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   4.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.8  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   6.4  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   6.4  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    25   6.4  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    25   8.4  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    25   8.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.4  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   8.4  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +3

Query: 189 KTALCFAXLVNTIQEGSVKKVNQST-MAFKCMENINAFLEAVKKLGVPPPGNFP-DDRFV 362
           +  +  A LV   Q   + K+  S  + F+  +NIN FL+ +  +G+P   +F   D + 
Sbjct: 70  RNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYE 129

Query: 363 GETEP--LLCRHLL 398
           G+  P  + C H L
Sbjct: 130 GKNLPKVIYCIHAL 143


>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
 Frame = +3

Query: 234 GSVKKVNQSTMAFKCMENINAFLE-AVKKLGVPPPGNF-PDDRFVGETEPLLCRHLLG-N 404
           G+  +  +S M F  MENI+AF+  A + + VP    F   D F    +  + R +   +
Sbjct: 46  GANIRYKESNMPFVQMENISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFS 105

Query: 405 RWAGRRLTTVNRPIGPK---EPTRIFEIFQKNN*R 500
           R+A +      R +GPK   +  R+F   Q+   R
Sbjct: 106 RYAAKMFPGKVRGLGPKLAEKKPRVFSAQQQREFR 140


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 38  AKLESTPKHRRESTANTTMK*RMKLSNGSGN*PANRLTQTGRPTTLYEILK 190
           AK  STP  R+ S  + T   ++ L   +GN  +N  TQ  R T    +L+
Sbjct: 39  AKKASTPDLRQTSLTSMTASEQIPLVTNNGNGNSNVSTQYQRLTPREHVLR 89


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 3   VVNTKNGRISRWQSWNQRRSTGENPQQI 86
           +++T+  +   W+SW Q  STG NP +I
Sbjct: 22  IIHTRPHKKCDWRSWEQWESTG-NPVRI 48


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 86  YLLWILACASALIPALPARYSAIF 15
           +LLW+L CA  LI  L +   ++F
Sbjct: 572 FLLWLLICAFGLIGVLSSWLKSLF 595


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 273 KCMENINAFLEAVKKLG 323
           KC+  +N ++E VKK G
Sbjct: 108 KCLNTVNKYMEVVKKYG 124


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 383  LSSLAWQSLGRKASNYGKPSNRSQGTDKN 469
            LSS  W SLG K S + K       TD N
Sbjct: 1983 LSSGTWASLGMKLSFFTKSITHFDATDAN 2011


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 324 VPPPGNFPDDRFVGETEPLLCRHLL 398
           +PPP + P   FVG+ +P+ C H L
Sbjct: 358 MPPPID-PYSIFVGQLDPVNCTHYL 381


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 407 LGRKASNYGKPSNRSQGTDKNIRDFSEEQLK 499
           + + +SNY  P +R + +D N  D   + LK
Sbjct: 492 MSQDSSNYSSPLHRRKASDSNFSDPRFDDLK 522


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +1

Query: 16  KMAEYRAGKA-GINAEAQARIH----SKYNDEVAHETLEWIRKLTGEPANT 153
           K+ E   G+   +  ++ ++IH     +Y+DE   ET   I +L  +P NT
Sbjct: 85  KIDECTTGRVYALKFKSSSQIHFYWMQEYSDEKDKETASLINQLIADPVNT 135


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 213 LVNTIQEGSVKKVNQST-MAFKCMENINAFLEAVKKLGVPPPGNFPDDRFVGETEPLL 383
           L+  I + ++ + N++  M    +EN+N  LE +K  G+P     P D   G  + +L
Sbjct: 46  LLEIIGDENLGRYNRNPRMRVHRLENVNKALEYIKSKGMPLTNIGPADIVDGNLKLIL 103


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 219 NTIQEGSVKKV--NQSTMAFKCMENINAFLEAVKKLG 323
           +TI E  + K   N+    FKC+EN N  + + K +G
Sbjct: 165 DTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = -3

Query: 466 LVGSLGPIGRFTVVRRLPAQRLPSK*RQSKGSVSPTNRSSGKFPGGGTPNFLTASKNA 293
           L G   PIGR   +RR PA       + S+ + S TN SS       T    T   NA
Sbjct: 446 LPGLAAPIGRKNTLRRTPA-------KSSEEAKSTTNDSSPPKDSSSTSTQPTEQSNA 496


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 125 LIHSRVSCATSSLYLLWILAC 63
           +IHS + C+ SSLY L +  C
Sbjct: 674 VIHSSLPCSKSSLYQLSLSLC 694


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,884
Number of Sequences: 5004
Number of extensions: 45887
Number of successful extensions: 146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)