Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O19
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0952 - 33310262-33310273,33310468-33311142 30 1.2
07_03_0622 + 20031385-20032341,20032423-20032953 29 2.1
04_04_0109 + 22837506-22837613,22837965-22838069 29 2.8
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 29 2.8
07_01_0497 + 3731842-3732386,3732487-3732808,3733232-3733474 28 3.7
02_05_0862 - 32305562-32305654,32305935-32306033,32306178-323062... 28 4.8
07_03_0443 + 18275397-18276355,18276394-18276931 27 6.4
06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970 27 6.4
02_01_0169 - 1166683-1166790,1166981-1167043,1167376-1167447,116... 27 6.4
>01_06_0952 - 33310262-33310273,33310468-33311142
Length = 228
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 23 PNIALAKLESTPKHRRESTANTT 91
PN+ LAKL S+P+ RR S A +T
Sbjct: 65 PNLRLAKLRSSPRWRRRSAALST 87
>07_03_0622 + 20031385-20032341,20032423-20032953
Length = 495
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 354 RFVGETEPLLCRHLLGNRWAGRRLTTV 434
R+VG + + RHL G RWAGRR V
Sbjct: 147 RYVGRIDGEVRRHLAG-RWAGRRTVAV 172
>04_04_0109 + 22837506-22837613,22837965-22838069
Length = 70
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 278 HGEHQCVFGSG*KVGRAAPRKLSRRSICGRDRTFTLSSL-AWQSLGRKASNYGK 436
HG H+ G G VGR +P + GRD T+ + S+ ++ + R ++YG+
Sbjct: 18 HGLHRV--GGGEPVGRRSPPLPKWEELMGRDWTYHIRSMSSFMNKDRDKNDYGQ 69
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 213 LVNTIQEGSVKKVNQSTMAFKCMENINAFLEAVKKLGVP 329
+VNT + ++ + AF+ EN+ FL A +++G+P
Sbjct: 121 VVNTAADSVLQPDGAALSAFQYFENVRNFLVAAQEIGLP 159
>07_01_0497 + 3731842-3732386,3732487-3732808,3733232-3733474
Length = 369
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 290 QCVFGSG*KVGRAAPRKLSRRSICGRDRTFTLSSLAWQSLGRKASNYGKP 439
+ V +G ++G RK C +F+L+ L W+ K N+G P
Sbjct: 55 RAVLDAGKELGFFQVRKQQNPQACRYTHSFSLNRLTWRCRACKVVNHGVP 104
>02_05_0862 -
32305562-32305654,32305935-32306033,32306178-32306259,
32307407-32307764,32308745-32309521,32309612-32309716,
32309803-32309911,32311016-32311024
Length = 543
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 382 SKGSVSPTNRSSGKFPGGGTPNF 314
SK S + + SG FP GTPN+
Sbjct: 125 SKSSTASSRSRSGTFPSPGTPNY 147
>07_03_0443 + 18275397-18276355,18276394-18276931
Length = 498
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 354 RFVGETEPLLCRHLLGNRWAGRRLTTV 434
R+VG+ + + RHL RWAGRR V
Sbjct: 148 RYVGKIDSEVRRHLAA-RWAGRRTVAV 173
>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
Length = 371
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -3
Query: 379 KGSVSPTNRSSGKFPGGGTPNFLTASKNALMFSMHLKAIVDWLTFL 242
+ S +P+ SS FP G+ + +T N+L+ + +++ WL L
Sbjct: 130 RASYNPSPASSS-FPSSGSSSHITIGGNSLIGGVEGSSLIPWLKTL 174
>02_01_0169 -
1166683-1166790,1166981-1167043,1167376-1167447,
1167734-1167811,1168420-1168548,1169373-1169483,
1169587-1169655,1169733-1169870,1170322-1170460,
1170797-1170852,1171677-1171732,1172034-1172078,
1172225-1172303,1172770-1172864,1173074-1173449
Length = 537
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 197 CRLLISRTKLSADPSVLAGSPVSFLIHSRVSCATSSLYLLWIL 69
C LL++ + S + ++LAG + FL S +C +LL I+
Sbjct: 441 CALLVTPSVHSLEGTLLAGRDLRFLSQSMGACFGIGTFLLMII 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,012,766
Number of Sequences: 37544
Number of extensions: 327079
Number of successful extensions: 910
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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