Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O19
(501 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans... 30 1.0
At5g44010.1 68418.m05386 expressed protein 29 2.3
At5g27000.1 68418.m03221 kinesin motor protein-related non-conse... 29 2.3
At4g38410.1 68417.m05429 dehydrin, putative similar to dehydrin ... 28 4.1
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 28 4.1
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 28 4.1
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 27 5.4
At2g44050.1 68415.m05476 6,7-dimethyl-8-ribityllumazine synthase... 27 5.4
At2g27210.1 68415.m03270 kelch repeat-containing serine/threonin... 27 5.4
At3g48610.1 68416.m05307 phosphoesterase family protein low simi... 27 7.1
At2g47500.1 68415.m05929 kinesin motor protein-related 27 7.1
>At2g13150.1 68415.m01450 expressed protein contains a bZIP
transcription factor basic domain signature (PDOC00036)
Length = 262
Score = 29.9 bits (64), Expect = 1.0
Identities = 26/73 (35%), Positives = 39/73 (53%)
Frame = -1
Query: 282 PCT*KPSSTG*PS*LIPLESCSRAXQSRVPSFNISYKVVGRPVCVSRFAGQFPDPFESFM 103
P + PSS+ S IPL + S + +SR S + K + P+CV R A + D E F
Sbjct: 27 PLSPSPSSSRRNS--IPLMNPSASVESRDSSIRVKKKSLLPPLCVKRRAPK--DDIEPFK 82
Query: 102 RYFIVVFAVDSRL 64
R++ + +VDS L
Sbjct: 83 RHYRSL-SVDSCL 94
>At5g44010.1 68418.m05386 expressed protein
Length = 357
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = -2
Query: 197 CRLLISRTKLSADPSVLAGSPVSFLIHSRVSCATSSLYLLWILACASALIPALPARYSAI 18
C+LL+ R+K + S V ++ S + LW L SAL A +S +
Sbjct: 248 CKLLLQRSKCLKQNEIALNSKVEEILEYLTEILESRFHQLWKL--PSALTAAAIPSWSPL 305
Query: 17 FGV 9
FG+
Sbjct: 306 FGL 308
>At5g27000.1 68418.m03221 kinesin motor protein-related
non-consensus AT donor splice site at exon 12;
non-consensus AC acceptor splice site at exon 13
Length = 987
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Frame = +3
Query: 189 KTALCFAXLVNTIQEGSVKKVNQST---------MAFKCMENINAFLEAVKKLGVP 329
++ + ++N + GSV KV ++ AF+ ENI FL A++++G+P
Sbjct: 80 RSGIVLCNVLNKVNPGSVSKVVEAPDDVADGAALSAFQYFENIRNFLVAIEEMGLP 135
>At4g38410.1 68417.m05429 dehydrin, putative similar to dehydrin
ERD10 (Low-temperature-induced protein LTI45)
[Arabidopsis thaliana] SWISS-PROT:P42759
Length = 163
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 40 KAGINAEAQARIHSKYNDEVAHETLEWIRKLTGEPANTDGSADNFVRDIK 189
+AG N E + + K +EVA + E K+ + DG F+ IK
Sbjct: 69 EAGENGEKKEKKKKKKKNEVAEDQCETEEKIPAGIGHEDGKEKGFMEKIK 118
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 27.9 bits (59), Expect = 4.1
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Frame = -3
Query: 400 PSK*RQSKGSVSPT-----NRSSG--KFPGGGTPNFLTASKNAL 290
PS+ R S GS SP +R G PGG +P F T S+NA+
Sbjct: 132 PSETRSSSGSRSPPYEDGYDRRYGDRSSPGGRSPGFETGSRNAV 175
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 27.9 bits (59), Expect = 4.1
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Frame = -3
Query: 400 PSK*RQSKGSVSPT-----NRSSG--KFPGGGTPNFLTASKNAL 290
PS+ R S GS SP +R G PGG +P F T S+NA+
Sbjct: 132 PSETRSSSGSRSPPYEDGYDRRYGDRSSPGGRSPGFETGSRNAV 175
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 8 QHQKWPNIALAKLESTPKHRRESTANTTMK*R--MKLSNGSGN 130
QHQ P + +STP+H+++ T + R L+NGS N
Sbjct: 155 QHQNQPPSQQQQQQSTPQHQQQPTPQQQPQRRDGSHLANGSAN 197
>At2g44050.1 68415.m05476 6,7-dimethyl-8-ribityllumazine synthase /
DMRL synthase / lumazine synthase / riboflavin synthase
identical to 6,7-dimethyl-8-ribityllumazine synthase,
chloroplast [precursor] SP:O80575 from [Arabidopsis
thaliana]
Length = 227
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 358 NRSSGKFPGGGTPNFLTASKNALMFSMHLK 269
NRS GK G LTA + A +F HLK
Sbjct: 198 NRSGGKAGNKGAETALTALEMASLFEHHLK 227
>At2g27210.1 68415.m03270 kelch repeat-containing serine/threonine
phosphoesterase family protein similar to SP|P48482
Serine/threonine protein phosphatase PP1 isozyme 2 (EC
3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile
PF00149: Calcineurin-like phosphoesterase
Length = 1006
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 321 GVPPPGNFPDDRFVGETEPLLCRHLLGNRWAGRRLTTVNRPIGPK 455
G P R G T + C +L N+W+ RLT P P+
Sbjct: 135 GTPTSAGSAGIRLAGATADVHCYDVLSNKWS--RLTPYGEPPSPR 177
>At3g48610.1 68416.m05307 phosphoesterase family protein low
similarity to SP|P95246 Phospholipase C 2 precursor (EC
3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam
profile PF04185: Phosphoesterase family
Length = 520
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 361 TNRSSGKFPGGGTPNFLTASKNALMFSMHLKAIVDWLTFLT 239
T + + ++ G T F+ ASK A+ AIVD + LT
Sbjct: 475 TVKQAHEYVKGATSRFIRASKEAMKLGADKSAIVDMRSSLT 515
>At2g47500.1 68415.m05929 kinesin motor protein-related
Length = 974
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Frame = +3
Query: 189 KTALCFAXLVNTIQEGSVKKVNQSTM------------AFKCMENINAFLEAVKKLGVP 329
++ + ++N +Q G+V KV +S AF+ EN+ FL A++++G P
Sbjct: 80 RSGIILCKVLNKVQPGAVSKVVESPCDAILVADGAPLSAFQYFENVRNFLVAIQEMGFP 138
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,828,454
Number of Sequences: 28952
Number of extensions: 250734
Number of successful extensions: 794
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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