Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O18
(227 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 159 6e-41
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 26 0.58
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 26 0.77
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 25 1.3
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 24 2.4
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 24 2.4
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 24 2.4
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 24 3.1
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 23 5.4
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 23 5.4
SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 23 5.4
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 23 5.4
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 23 7.2
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 23 7.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 23 7.2
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom... 23 7.2
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 22 9.5
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 22 9.5
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra... 22 9.5
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 22 9.5
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 159 bits (385), Expect = 6e-41
Identities = 73/75 (97%), Positives = 75/75 (100%)
Frame = +2
Query: 2 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 181
YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLK+IHTSVWAGQKRLGQLAKWKTAEEV
Sbjct: 1810 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEV 1869
Query: 182 AALIRSLPVEEQPKQ 226
AALIRSLPVEEQP+Q
Sbjct: 1870 AALIRSLPVEEQPRQ 1884
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 0.58
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 2 YRVTIHKTFEGNLTTKPINGA 64
YR IH T G LTTK + GA
Sbjct: 178 YRTHIHTTTHGELTTKLLIGA 198
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 0.77
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 119 SVWAGQKRLGQLAKWKTAEEVAALIRS 199
S WA +R+GQ ++ AE+V +RS
Sbjct: 290 SKWANDQRIGQEELYEAAEKVVLELRS 316
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 1.3
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -2
Query: 178 FFSGLPFRELS*TLLTGPYTRMNDLEEQLSSSGVEYEYSTVDR 50
FF G+ +++L+ ++ P+ + + E +S+ VE+ +DR
Sbjct: 526 FFDGIDWKKLAAKEISPPFKPIVEGEIDVSNFDVEFTNKAIDR 568
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 24.2 bits (50), Expect = 2.4
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 29 EGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAK-WKTAEEVAALIRSLP 205
+G + P N + NP TG++ K+ SV +K + + +KT + + RS
Sbjct: 23 QGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHVQRSQL 82
Query: 206 VE 211
+E
Sbjct: 83 LE 84
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 81 PELDNCSSRSFIRVYGPVRSV*DSSRNG 164
PE + S +S + ++GPV+++ + R G
Sbjct: 324 PETSDVSLKSAMSIFGPVKAIEFARRKG 351
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +1
Query: 88 WTIVPQDHSYECMGRSEASRTAREMEDR*RSGCSNSLTAS 207
W ++P +++C+ + T + + R G S +LT S
Sbjct: 522 WALLPGSSAWKCVAIHHFANTHSQASIKQRYGFSKALTCS 561
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 23.8 bits (49), Expect = 3.1
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 27 SRVI*LRSLSTVLYS-YSTPELDNCSSRSFIRVYGPVRSV*DSSRNGRPL 173
S ++ + STV+ S STP++D+ + +RV G R SSR RP+
Sbjct: 66 SEIVTSTANSTVVSSALSTPKIDDAQNSDDVRVDGTRR----SSRAKRPV 111
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 121 TRMNDLEEQLSSSGVEYEYSTVDRLRS 41
T +ND+ +LSSS ++ + LRS
Sbjct: 2 TSLNDIVNKLSSSKIKTRSDALQNLRS 28
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 23.0 bits (47), Expect = 5.4
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 45 RSLSTVLYSYSTPELDNCSSRSFIRVYGPVRSV*DSSRNGRPLKKW 182
RS S ++Y T DN S+ S + +RS G P ++
Sbjct: 347 RSDSPIVYDVDTHSEDNASTASSEAISQSMRSFQPQPNTGSPFPRF 392
>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 85 NWTIVPQDHSYECMGRSEASRTAREM 162
+WT++P+ + Y A R A+EM
Sbjct: 151 HWTVIPKFYQYAFDLLDSALREAKEM 176
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 69 NIAPLIGFVVKLPSNVLWIVTRY 1
++ P+IG KL +N +IVT Y
Sbjct: 53 SLYPVIGSEFKLMNNASYIVTAY 75
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +1
Query: 1 VPSDDPQDIRG*FNYEAYQRCYIHIQPQNWTIVPQDHSY 117
+P ++ +D+ A + H++PQN ++ +D Y
Sbjct: 43 IPDEELEDVE-----RAEEMALSHLEPQNAVVLHEDKQY 76
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 90 PVLGLNMNIAPLIGFVVKLPSNVLWI 13
PV G N N AP+I + + + W+
Sbjct: 483 PVTGKNFNYAPVIFGAITIFGLISWL 508
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 127 PYTRMNDLEEQLSSSGVEYEYS 62
PY R ++ E +S G Y Y+
Sbjct: 1636 PYRRSTEIAENMSMDGNAYPYT 1657
>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 17 HKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLG 148
H TF + +K GA+ +FN + + + SV G K +G
Sbjct: 182 HNTFLSPVVSKASAGALEVFNISHVKNPMVFLRNSVLKGWKVIG 225
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/40 (22%), Positives = 22/40 (55%)
Frame = +3
Query: 18 TRHSRVI*LRSLSTVLYSYSTPELDNCSSRSFIRVYGPVR 137
T +R + ++S ++ S+P L+N S ++ ++ +R
Sbjct: 14 TEKARTVSDLTISQAIFELSSPFLENKSQKALDTLFSAIR 53
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 86 TGQLFLKIIHTSVWAGQKRLGQLAKWK 166
T + L + H +W+G+ L Q W+
Sbjct: 215 TKGITLSLQHQDLWSGEHLLSQNLLWR 241
>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
translocase complex subunit Tim21 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 56 NGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLA 157
N +I IF L + + TS+W G+ G A
Sbjct: 72 NFSIVIFGGGVFGLIIYALVTSIWKGEAHYGDEA 105
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 22.2 bits (45), Expect = 9.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 227 SVWVALQLAVSELEQPLLQRSSISR 153
S +V L LA+ PLL S ISR
Sbjct: 407 SAYVGLLLAILSSSFPLLVASKISR 431
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 998,975
Number of Sequences: 5004
Number of extensions: 17531
Number of successful extensions: 62
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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