Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O18
(227 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 159 2e-40
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 159 2e-40
02_05_0055 + 25453699-25453830,25454157-25454269,25454686-254549... 30 0.23
07_03_0105 + 13455906-13457198 27 1.6
09_03_0174 - 13097138-13098265 27 2.1
06_03_1332 - 29403320-29407804 27 2.8
04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292 27 2.8
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 26 3.7
03_02_0598 + 9727112-9727315,9727544-9727631,9728550-9728758,972... 26 4.9
08_02_0222 + 14446967-14448310 25 8.6
07_03_1101 + 23967298-23967366,23968918-23969021,23969616-239697... 25 8.6
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 25 8.6
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 159 bits (387), Expect = 2e-40
Identities = 73/75 (97%), Positives = 75/75 (100%)
Frame = +2
Query: 2 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 181
YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLK+IHTSVWAGQKRLGQLAKWKTAEEV
Sbjct: 1801 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEV 1860
Query: 182 AALIRSLPVEEQPKQ 226
AAL+RSLPVEEQPKQ
Sbjct: 1861 AALVRSLPVEEQPKQ 1875
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 159 bits (387), Expect = 2e-40
Identities = 73/75 (97%), Positives = 75/75 (100%)
Frame = +2
Query: 2 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 181
YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLK+IHTSVWAGQKRLGQLAKWKTAEEV
Sbjct: 1801 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEV 1860
Query: 182 AALIRSLPVEEQPKQ 226
AAL+RSLPVEEQPKQ
Sbjct: 1861 AALVRSLPVEEQPKQ 1875
>02_05_0055 +
25453699-25453830,25454157-25454269,25454686-25454942,
25455480-25456297
Length = 439
Score = 30.3 bits (65), Expect = 0.23
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 56 NGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ 226
N +F +PR Q + ++ RLG A+ K AEE+ + V EQ KQ
Sbjct: 57 NNRLFARDPRHLQFEADVNRLFLYTSYYRLGANAEEKDAEEIIDMASKASVSEQQKQ 113
>07_03_0105 + 13455906-13457198
Length = 430
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 32 GNLTTKPINGAIFIFNPRTG 91
G KP +GA+ +FNP TG
Sbjct: 110 GTAAGKPTSGAVLLFNPLTG 129
>09_03_0174 - 13097138-13098265
Length = 375
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 218 VALQLAVSELEQPLLQRSSISRAVLDASDRPIHSYE*S*GT-IVQFWG 78
+ + L E E + +SS LDAS I SYE GT +++WG
Sbjct: 313 IHVDLVTREGEMAFVPKSSSYSNTLDASITNIWSYELGCGTPTMEYWG 360
>06_03_1332 - 29403320-29407804
Length = 1494
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +1
Query: 112 SYECMGRSEASRTAREMEDR*RSGCSNSLTAS*RAT 219
S C G EASR A E E SGC L S ++T
Sbjct: 132 SCSCGGDEEASRHANEEEAVAGSGCMRILACSAQST 167
>04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292
Length = 729
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 52 YQRCY-IHIQPQNWTIVPQDHSYECM 126
Y+ CY ++W +VP+ Y CM
Sbjct: 493 YEGCYHFRSMQEDWNLVPRSDHYSCM 518
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 12 RSTRHSRVI*LRSLSTVLYSYSTPELDNCSSRSFIRV 122
R RH RV L T L+ TP L N S SF+R+
Sbjct: 78 RRRRHRRVTGLSLPHTPLHGPITPLLGNLSFLSFLRL 114
>03_02_0598 +
9727112-9727315,9727544-9727631,9728550-9728758,
9728850-9728996,9729338-9729385
Length = 231
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 102 SRSFIRVYGPVRSV*DSSRNG 164
S SF+R+YG ++ D+SR G
Sbjct: 106 SDSFVRLYGDIQRAIDASRTG 126
>08_02_0222 + 14446967-14448310
Length = 447
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 7 SDDPQDIRG*FNYEAYQRCYIHIQPQNWTIVPQDHSYECMG 129
+D+ Q I ++ Q Y H Q ++P+ HS E G
Sbjct: 284 NDEQQQIFSLPEHQCSQEQYCHHDDQQDCVLPEQHSQELHG 324
>07_03_1101 +
23967298-23967366,23968918-23969021,23969616-23969716,
23969792-23969858,23969910-23970045,23970470-23970583,
23970649-23970786,23970865-23970949,23971029-23971075,
23971216-23971351,23971396-23971436
Length = 345
Score = 25.0 bits (52), Expect = 8.6
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = +2
Query: 5 RVTIHKTFEGN----LTTKPI--NGAIFI-FNPRTGQLFLKIIHTSVWAGQKRLGQLAKW 163
RV + +F GN KP+ N + F+P + SV+A R G++A+W
Sbjct: 232 RVHVLDSFHGNNIATYNVKPVVSNSTLEASFSPDGNHIISGSGDGSVYAWNVRSGKVARW 291
Query: 164 KTAEEVAALIRSLP 205
+ + LIR P
Sbjct: 292 GSTDSEPPLIRWAP 305
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 1 VPSDDPQDIRG*FNYEAYQRCYI 69
+P DDP D F+ +RCY+
Sbjct: 177 IPDDDPSDFSFFFDTGGRRRCYL 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,344,371
Number of Sequences: 37544
Number of extensions: 107416
Number of successful extensions: 272
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 268085412
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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