Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O18
(227 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC064370-1|AAH64370.1| 2335|Homo sapiens PRP8 pre-mRNA processin... 160 6e-40
AY486135-1|AAS64748.1| 436|Homo sapiens apoptosis-regulated pro... 160 6e-40
AF092565-1|AAC61776.1| 2335|Homo sapiens splicing factor Prp8 pr... 160 6e-40
AB007510-1|BAA22563.1| 2335|Homo sapiens PRP8 protein protein. 160 6e-40
AY486134-1|AAS64747.1| 437|Homo sapiens apoptosis-regulated pro... 157 6e-39
BC052973-1|AAH52973.1| 1187|Homo sapiens PCDH12 protein protein. 29 3.5
BC042634-1|AAH42634.1| 1187|Homo sapiens PCDH12 protein protein. 29 3.5
AY358428-1|AAQ88794.1| 1184|Homo sapiens PCDH12 protein. 29 3.5
AK024140-1|BAB14837.1| 1187|Homo sapiens protein ( Homo sapiens ... 29 3.5
AK023785-1|BAB14677.1| 808|Homo sapiens protein ( Homo sapiens ... 29 3.5
AF240635-1|AAF73962.1| 1184|Homo sapiens vascular endothelial ca... 29 3.5
AF231025-1|AAF61931.1| 1184|Homo sapiens protocadherin 12 protein. 29 3.5
AB026893-1|BAA95162.1| 1184|Homo sapiens vascular cadherin-2 pro... 29 3.5
>BC064370-1|AAH64370.1| 2335|Homo sapiens PRP8 pre-mRNA processing
factor 8 homolog (S. cerevisiae) protein.
Length = 2335
Score = 160 bits (389), Expect = 6e-40
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +2
Query: 2 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 181
YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV
Sbjct: 1786 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 1845
Query: 182 AALIRSLPVEEQPKQ 226
AALIRSLPVEEQPKQ
Sbjct: 1846 AALIRSLPVEEQPKQ 1860
>AY486135-1|AAS64748.1| 436|Homo sapiens apoptosis-regulated
protein 1 protein.
Length = 436
Score = 160 bits (389), Expect = 6e-40
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +2
Query: 2 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 181
YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV
Sbjct: 284 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 343
Query: 182 AALIRSLPVEEQPKQ 226
AALIRSLPVEEQPKQ
Sbjct: 344 AALIRSLPVEEQPKQ 358
>AF092565-1|AAC61776.1| 2335|Homo sapiens splicing factor Prp8
protein.
Length = 2335
Score = 160 bits (389), Expect = 6e-40
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +2
Query: 2 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 181
YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV
Sbjct: 1786 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 1845
Query: 182 AALIRSLPVEEQPKQ 226
AALIRSLPVEEQPKQ
Sbjct: 1846 AALIRSLPVEEQPKQ 1860
>AB007510-1|BAA22563.1| 2335|Homo sapiens PRP8 protein protein.
Length = 2335
Score = 160 bits (389), Expect = 6e-40
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +2
Query: 2 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 181
YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV
Sbjct: 1786 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 1845
Query: 182 AALIRSLPVEEQPKQ 226
AALIRSLPVEEQPKQ
Sbjct: 1846 AALIRSLPVEEQPKQ 1860
>AY486134-1|AAS64747.1| 437|Homo sapiens apoptosis-regulated
protein 2 protein.
Length = 437
Score = 157 bits (381), Expect = 6e-39
Identities = 74/75 (98%), Positives = 74/75 (98%)
Frame = +2
Query: 2 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 181
YRVTIHKTFEGNLTTKPINGAIFIFN RTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV
Sbjct: 285 YRVTIHKTFEGNLTTKPINGAIFIFNTRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 344
Query: 182 AALIRSLPVEEQPKQ 226
AALIRSLPVEEQPKQ
Sbjct: 345 AALIRSLPVEEQPKQ 359
>BC052973-1|AAH52973.1| 1187|Homo sapiens PCDH12 protein protein.
Length = 1187
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 65 IFIFNPRTGQLFLKIIHTSVWAGQK 139
+FI NP TGQLF+ + + S G +
Sbjct: 646 LFILNPHTGQLFVNVTNASSLIGSE 670
>BC042634-1|AAH42634.1| 1187|Homo sapiens PCDH12 protein protein.
Length = 1187
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 65 IFIFNPRTGQLFLKIIHTSVWAGQK 139
+FI NP TGQLF+ + + S G +
Sbjct: 646 LFILNPHTGQLFVNVTNASSLIGSE 670
>AY358428-1|AAQ88794.1| 1184|Homo sapiens PCDH12 protein.
Length = 1184
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 65 IFIFNPRTGQLFLKIIHTSVWAGQK 139
+FI NP TGQLF+ + + S G +
Sbjct: 646 LFILNPHTGQLFVNVTNASSLIGSE 670
>AK024140-1|BAB14837.1| 1187|Homo sapiens protein ( Homo sapiens
cDNA FLJ14078 fis, clone HEMBB1002044, moderately
similar to Mus musculus mRNA for vascular cadherin-2. ).
Length = 1187
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 65 IFIFNPRTGQLFLKIIHTSVWAGQK 139
+FI NP TGQLF+ + + S G +
Sbjct: 646 LFILNPHTGQLFVNVTNASSLIGSE 670
>AK023785-1|BAB14677.1| 808|Homo sapiens protein ( Homo sapiens
cDNA FLJ13723 fis, clone PLACE2000458, weakly similar to
CADHERIN-RELATED TUMOR SUPPRESSOR PRECURSOR. ).
Length = 808
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 65 IFIFNPRTGQLFLKIIHTSVWAGQK 139
+FI NP TGQLF+ + + S G +
Sbjct: 270 LFILNPHTGQLFVNVTNASSLIGSE 294
>AF240635-1|AAF73962.1| 1184|Homo sapiens vascular endothelial
cadherin 2 protein.
Length = 1184
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 65 IFIFNPRTGQLFLKIIHTSVWAGQK 139
+FI NP TGQLF+ + + S G +
Sbjct: 646 LFILNPHTGQLFVNVTNASSLIGSE 670
>AF231025-1|AAF61931.1| 1184|Homo sapiens protocadherin 12 protein.
Length = 1184
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 65 IFIFNPRTGQLFLKIIHTSVWAGQK 139
+FI NP TGQLF+ + + S G +
Sbjct: 646 LFILNPHTGQLFVNVTNASSLIGSE 670
>AB026893-1|BAA95162.1| 1184|Homo sapiens vascular cadherin-2
protein.
Length = 1184
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 65 IFIFNPRTGQLFLKIIHTSVWAGQK 139
+FI NP TGQLF+ + + S G +
Sbjct: 646 LFILNPHTGQLFVNVTNASSLIGSE 670
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,872,476
Number of Sequences: 237096
Number of extensions: 608282
Number of successful extensions: 1377
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 76,859,062
effective HSP length: 54
effective length of database: 64,055,878
effective search space used: 1345173438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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