Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O18
(227 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80070.1 68414.m09373 splicing factor, putative strong simila... 159 2e-40
At4g38780.1 68417.m05491 splicing factor, putative strong simila... 158 4e-40
At5g23200.1 68418.m02713 expressed protein 27 1.3
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro... 27 2.2
At5g08270.1 68418.m00974 expressed protein 26 2.9
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 26 3.9
At3g06240.1 68416.m00717 F-box family protein contains F-box dom... 25 5.1
At2g14800.1 68415.m01677 hypothetical protein 25 5.1
At3g46420.1 68416.m05032 leucine-rich repeat family protein / pr... 25 6.8
At1g67140.1 68414.m07638 expressed protein 25 6.8
At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT... 25 8.9
At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR... 25 8.9
At1g28020.1 68414.m03431 pentatricopeptide (PPR) repeat-containi... 25 8.9
>At1g80070.1 68414.m09373 splicing factor, putative strong similarity
to splicing factor Prp8 [Homo sapiens] GI:3661610;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 2382
Score = 159 bits (387), Expect = 2e-40
Identities = 73/75 (97%), Positives = 75/75 (100%)
Frame = +2
Query: 2 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 181
YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLK+IHTSVWAGQKRLGQLAKWKTAEEV
Sbjct: 1833 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEV 1892
Query: 182 AALIRSLPVEEQPKQ 226
AAL+RSLPVEEQPKQ
Sbjct: 1893 AALVRSLPVEEQPKQ 1907
>At4g38780.1 68417.m05491 splicing factor, putative strong similarity
to splicing factor Prp8 [Homo sapiens] GI:3661610;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 2332
Score = 158 bits (384), Expect = 4e-40
Identities = 73/75 (97%), Positives = 74/75 (98%)
Frame = +2
Query: 2 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 181
YRVTIHKTFEGNLTTKPING IFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV
Sbjct: 1785 YRVTIHKTFEGNLTTKPINGVIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEV 1844
Query: 182 AALIRSLPVEEQPKQ 226
AAL+RSLPVEEQPKQ
Sbjct: 1845 AALVRSLPVEEQPKQ 1859
>At5g23200.1 68418.m02713 expressed protein
Length = 399
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 68 FIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ 226
F NPR Q + ++ RLG+ A+ AEE+ + + EQ KQ
Sbjct: 21 FAKNPRQLQFEADVNKLFMYTSYNRLGREAEETDAEEIIEMAGKATLSEQQKQ 73
>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
protein similar to ubiquitin-conjugating enzyme
GB:3319990 from [Mus musculus]; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 1163
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 83 RTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQP 220
+ G++ L +I T W G+KR L K T ++ I++L + E+P
Sbjct: 686 KCGKVCLSLIST--WTGKKREKWLPKESTMLQLLVSIQALILNEKP 729
>At5g08270.1 68418.m00974 expressed protein
Length = 386
Score = 26.2 bits (55), Expect = 2.9
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 68 FIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ 226
F NPR Q I ++ RLG+ A+ AEE+ + EQ KQ
Sbjct: 26 FAKNPRQLQFEADINKLFMFTSYNRLGRDAEEADAEEIIEMAGKATFSEQQKQ 78
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 45 RSLSTVLYSYSTPELDNCSSR 107
RS+ST+LY S +L NC R
Sbjct: 945 RSVSTILYLVSLQDLTNCPFR 965
>At3g06240.1 68416.m00717 F-box family protein contains F-box domain
Pfam:PF00646
Length = 427
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 8 VTIHKTFEGNLTTKPINGAIFIFNPRTG 91
V I + G + P GA+F++NP TG
Sbjct: 163 VEIVGSSNGLVCISPGEGAVFLYNPTTG 190
>At2g14800.1 68415.m01677 hypothetical protein
Length = 580
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +3
Query: 33 VI*LRSLSTVLYSYSTPELDNCSSRSFIRV 122
+I L+ L+TVL+SY P+L + S+S++ V
Sbjct: 524 IINLQQLATVLHSYEKPKLGD-FSQSYLLV 552
>At3g46420.1 68416.m05032 leucine-rich repeat family protein /
protein kinase family protein contains leucine rich
repeat (LRR) domains, INTERPRO:IPR001611; contains
serine/threonine protein kinases active-site signature,
Prosite:PS00108
Length = 838
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 227 SVWVALQLAVSELEQPLLQRSSISRAVLDASD 132
SVW AL+LA+S +R ++S+ V+D +
Sbjct: 771 SVWRALELAMSCANPTSEKRPNMSQVVIDLKE 802
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 49 AYQRCYIHIQPQNWTIVPQDHS 114
AY+R ++H+ P + I+PQ S
Sbjct: 622 AYKRIFLHLYPHVFRIMPQKPS 643
>At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT3)
identical to potassium channel [Arabidopsis thaliana]
gi|1100898|gb|AAA97865; Note: also identical to AKT3
[Arabidopsis thaliana] gi|1172218|gb|AAA96153, which is
a truncated version of AKT2, PMID:10852932; member of
the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+
channel family, PMID:11500563; identical to cDNA
inward-rectifying K+ channel (AKT3) GI:1172219
Length = 802
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +1
Query: 70 HIQPQNWTIVPQDHSYEC 123
HI+ W I P D Y C
Sbjct: 60 HIRSSGWIISPMDSRYRC 77
>At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1167
Score = 24.6 bits (51), Expect = 8.9
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +2
Query: 20 KTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRL--GQLAKWKTAEEVAALI 193
K EG L T PI + P T + + ++ Q+ GQ+ KWK A +L+
Sbjct: 92 KELEGKLVTIPI---FYNVEPATVRYQKEAFGAALTKTQENDSDGQMKKWKEALTYVSLL 148
Query: 194 RSLPVEEQPKQ 226
P + K+
Sbjct: 149 VGFPFNSKSKE 159
>At1g28020.1 68414.m03431 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 612
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +2
Query: 47 KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPK 223
KP + I N R + F K + S W G+K++ L A + L +EE K
Sbjct: 399 KPSDLKCLIKNLRDSKQFSKALQVSEWMGEKQVCNLYLEDYAARLYLTENVLGLEEAEK 457
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,199,825
Number of Sequences: 28952
Number of extensions: 90249
Number of successful extensions: 253
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 55
effective length of database: 10,478,200
effective search space used: 209564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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