Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O17
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.3  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +1

Query: 190 SPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 315
           S Y G    L  H PT       +V   + ++HPN   N  +
Sbjct: 370 STYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPNCKINRKV 411


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 141 VWSCGTLCWWISS 103
           VWS G +CW + S
Sbjct: 821 VWSMGIVCWEVMS 833


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 241 YPFKPPKVAFTTRIYHPNINSN 306
           Y F  P+V +T + +HP    N
Sbjct: 138 YNFDYPQVPYTVKNFHPRCAVN 159


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 527 ANIHTSPQPRINLPIPSVPAP 589
           A + T+  P    P+PS+P P
Sbjct: 461 ATVGTTVAPCFEEPLPSLPLP 481


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 149 ICFIGKPQLWVQLTALIKEEYSF*PYISLQIIHL 250
           I +I  P  W++   L K+   F  Y    +IH+
Sbjct: 174 IHWIWTPHGWMRRNVLNKQHVHFHDYTGSVVIHV 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,778
Number of Sequences: 438
Number of extensions: 4803
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)