Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O16
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy... 95 7e-21
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch... 87 1e-18
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 35 0.010
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 29 0.37
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 27 2.0
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce... 27 2.0
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz... 27 2.6
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 27 2.6
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe... 25 6.1
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 8.1
>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 162
Score = 95.1 bits (226), Expect = 7e-21
Identities = 52/125 (41%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Frame = +2
Query: 62 KTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGMDRDAQLVSGGVGAQTRQVLENLKHVV 241
KT + SP + GPY+QAI ++ +Y SG + + + +++ G VG QTRQ L NL+ V+
Sbjct: 39 KTPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQEVL 96
Query: 242 EAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPKNCPARATYQVTKLPLN---AAVEI 412
G SL ++K I LA+MDDF VN++Y E P PAR+ V +PL+ +EI
Sbjct: 97 TEAGSSLNKIVKVNIFLADMDDFAAVNKVYTEVLPDPKPARSCVAVKTVPLSTQGVKIEI 156
Query: 413 EAIAL 427
E IAL
Sbjct: 157 ECIAL 161
>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 126
Score = 87.4 bits (207), Expect = 1e-18
Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Frame = +2
Query: 101 GPYSQAILSDKTLYISGVLGMDRDAQLVSGGVGAQTRQVLENLKHVVEAGGGSLESVIKT 280
GPY+QA+ S ++ SG + +D V G + QTR +ENL V+ G SLE ++K
Sbjct: 15 GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73
Query: 281 TILLANMDDFQCVNQIYAEYFPKNCPARATYQVTKLPLNA---AVEIEAIA 424
I L ++DDF +N++Y E P PAR T K+PL++ +EIE IA
Sbjct: 74 NIFLTDIDDFAAMNEVYKEMLPDPMPARTTVAAGKIPLSSKGGKIEIECIA 124
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 34.7 bits (76), Expect = 0.010
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Frame = +2
Query: 98 VGPYSQAILSDKTLYISGVLGMDRDAQLVSGGVGAQTRQVLENLKHVVE-AGGGSLESVI 274
+GPYSQ+I ++ ++ISG +G+ + + + +++ L+H A + S+I
Sbjct: 421 IGPYSQSICANGVVFISGQIGLIPSVMELK--LHDKIFEMVLALQHANRVAKAMRVGSLI 478
Query: 275 KTTILLANMDDFQCVNQIYAEYFPKNCPARATYQVT---KLPLNAAVE 409
+ + D CV +I++EY KN + V LP NA+VE
Sbjct: 479 ACLAYVCDSRDADCVVKIWSEY-TKNTGESSPVLVALVDALPRNASVE 525
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 29.5 bits (63), Expect = 0.37
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 182 VSGGVGAQTRQVLENLK-HVVEAGGGSLESVIKTTILLANMDDFQCV 319
++GG+ Q +Q L N HVV A G L SVI L N +C+
Sbjct: 226 ITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCL 272
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 27.1 bits (57), Expect = 2.0
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 68 IVTSPDVYKPVGPYSQ--AILSDKTLYISGVLGMDRDAQLVSGGVGAQTRQVLENLKHVV 241
IVT P + K VG Y + A+L ++++ + G+ + + + G + + EN +V
Sbjct: 79 IVTDPGIIK-VGLYDKVKALLEEQSITVHLYDGVQPNPTVGNVNQGLEIVKK-ENCDSMV 136
Query: 242 EAGGGSLESVIKTTILLA 295
GGGS K LLA
Sbjct: 137 SIGGGSAHDCAKGIALLA 154
>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 2 IDVLSKMSSTDSTANAHRVVKTIVTSPDVYKPVG 103
I L ++S D + +HR++++ +S + YK G
Sbjct: 31 ISKLKELSHADDSRKSHRIIRSGKSSGEAYKQAG 64
>SPBC342.04 |||adhesion regulating molecule protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 291
Score = 26.6 bits (56), Expect = 2.6
Identities = 25/86 (29%), Positives = 36/86 (41%)
Frame = +2
Query: 2 IDVLSKMSSTDSTANAHRVVKTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGMDRDAQL 181
ID L D+ N V+ IV+SP + + +SQA+ S + I LG+ D
Sbjct: 208 IDRLMPYMPPDTPNNLEGVL-AIVSSPQYAQALRSFSQALNSPGGVNIISALGLSLDESA 266
Query: 182 VSGGVGAQTRQVLENLKHVVEAGGGS 259
GA Q L+ + V GS
Sbjct: 267 NPNEGGA--LQFLKAIARFVSRNNGS 290
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 2.6
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +1
Query: 457 TLSLCTHLVYYYFVKYFENCHTCLDSKN 540
TL +Y+Y++ +FE C+ ++ +N
Sbjct: 164 TLDQIAAKLYFYYILFFEKCNRSVECRN 191
>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 297 IWTIFNALIKFMLNIFLKIALHGL 368
IW F AL+ M+ +FL +HGL
Sbjct: 77 IWYPF-ALLALMVGVFLSFVMHGL 99
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Frame = -3
Query: 152 LPIYRESCQ------IKWLDCRVQPVYRHLGMLQWSSPLCEHL 42
LP YR C+ I W D +Y HLG+ + E+L
Sbjct: 178 LPWYRGECKAALEDTIMWADKTTSCIYEHLGVTVEEQKMIENL 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,131
Number of Sequences: 5004
Number of extensions: 53876
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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