Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O14
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10) 39 0.004
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26) 38 0.005
SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08) 30 1.7
SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7) 29 2.3
SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1) 29 4.0
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45) 28 6.9
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016) 28 6.9
SB_59367| Best HMM Match : VWA (HMM E-Value=0) 27 9.1
SB_42141| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023) 27 9.1
SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22) 27 9.1
>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
Length = 260
Score = 38.7 bits (86), Expect = 0.004
Identities = 40/141 (28%), Positives = 53/141 (37%), Gaps = 3/141 (2%)
Frame = +1
Query: 187 LNPQHTVPTLVDDGLSIWESRAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTLY 366
L+P +T+P L + + S II YL K LY D R VDQ + DI T
Sbjct: 43 LSPFNTLPLLETKEGTFFSSNTIIRYLAASSDK---LYGSDLFQRGQVDQ--WLDITTCD 97
Query: 367 QRFGDYFYPQVFAGAPADKEKL-AKIEDALQLLDKFLDGQKYAAGPNXXXXXXXXXXXXX 543
G + K+ A I L ++K L G+K+ G +
Sbjct: 98 FEAAVAAVAIAKEGRDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSVATSIA 157
Query: 544 XFEAS--DIDFKKYPNIKRWY 600
S D D K Y NI WY
Sbjct: 158 VILTSLGDEDRKPYQNIVSWY 178
>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
Length = 492
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/86 (25%), Positives = 44/86 (51%)
Frame = +1
Query: 172 PEFLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYGKGSSLYPEDARARALVDQRLYFD 351
PE+L +NP VP +V +G +++ES I ++ + ++ P+D RA R++ D
Sbjct: 299 PEWLAINPNGLVPVIVHNGNAVYESSICIEFIDEAFSTPVTILPKDPYKRA--HGRMWGD 356
Query: 352 IGTLYQRFGDYFYPQVFAGAPADKEK 429
+ ++ +FY + D+E+
Sbjct: 357 F--VSKKLVPHFYTMLLKQDKEDQEE 380
>SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)
Length = 527
Score = 29.9 bits (64), Expect = 1.7
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 305 KTLERGRSSISACTLTLVPSTRDSEITSIRKYLPERLPTKRSWPRSRTLSSF--WTNSSM 478
KTL+ T T+ + + S + + LPER TK PRS+TL S +TNSSM
Sbjct: 66 KTLDHIEIQQGFKTFTIEDTIKPSSLKPPQ--LPER--TKLRKPRSKTLDSIPVYTNSSM 121
Query: 479 VKSTQP 496
V P
Sbjct: 122 VNLLYP 127
>SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7)
Length = 177
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 245 RAPSSLTWSTSTVKAAASTQKTLERGRSSISACTLTLVPSTRDSEITSIRKYLPERLPT 421
R P ++ +T+T+ L S+ + T+ T +S ITS+ LP LPT
Sbjct: 80 RVPRCISPTTATLTTETIAASQLTPSSSATTTTTIRTNTKTTESTITSLSTSLPVILPT 138
>SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1)
Length = 613
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 244 SRAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTLY 366
+R I+Y+VN+YG ++ Y E +A +Y D +Y
Sbjct: 513 TRGGISYIVNRYGNANNKYIESYDEQAPSKYVMYLDADNVY 553
>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)
Length = 2022
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 463 PKAGERPRSWPASLCRQALRQILADRSNLRISGRGYQCQSTSA 335
PK R + WP ++ RQ L +++A+ + +S R C ST A
Sbjct: 1567 PKESGR-KEWPIAVMRQVLEELIAETPSDLLS-RELWCSSTGA 1607
>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2499
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 247 RAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTLY 366
R I+Y+ N+YG+ ++ Y E A +Y D LY
Sbjct: 2089 RGGISYIANRYGEANNEYMESYDETAPSKYVMYLDANNLY 2128
>SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016)
Length = 583
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 247 RAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTLY 366
R I+Y+ N+YG+ ++ Y E A +Y D LY
Sbjct: 175 RGGISYIANRYGEANNEYMESYDETAPSKYVMYLDANNLY 214
>SB_59367| Best HMM Match : VWA (HMM E-Value=0)
Length = 847
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 211 TLVDDGLSIWESRAIITYLVNKYGK 285
T++D G S + R II ++++KYG+
Sbjct: 452 TMLDSGESFFTMRNIIKHIISKYGR 476
>SB_42141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 275 STVKAAASTQKTLERGRSSISACTLTLVPSTRDSEITSIRKYLPERLPTKRSWPRSRTLS 454
+T+K + + + T ++ T +T+ E TSI+ E T ++ S T
Sbjct: 16 TTIKPSTTDESTTNEASTAEFESTTAAQATTKTKEYTSIKPSNTEGSTTTEAYIHSATAE 75
Query: 455 -SFWTNSSMVKST 490
+F S VKST
Sbjct: 76 FTFTPTKSWVKST 88
>SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023)
Length = 650
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 269 STSTVKAAASTQKTLERGRSSISACTLTLVPSTRDSEITSIRK 397
STS AASTQ+ + S++ + T +PST +S K
Sbjct: 379 STSLQHTAASTQRMSSGSKGSLALSSHTTLPSTSQQPSSSTSK 421
>SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 780
Score = 27.5 bits (58), Expect = 9.1
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Frame = +2
Query: 251 PSSLTWSTSTVKAAASTQKTLERGRSSISACTLTLVPSTRDSEI-TSIRKYLPERLPTKR 427
PS T TST T +TL S + T T +PS E T++ + T
Sbjct: 180 PSPTTRGTSTAIPTPMTWQTLAAIPSPMVRQTSTAIPSPMAKETSTAMPSPTTRQTSTAI 239
Query: 428 SWPRSRTLSSFWTNSSMVKSTQPALI*P*LT*ASSQACPA 547
P SR +S+ T S M T A+ P + +S A P+
Sbjct: 240 PLPMSRQISAVIT-SPMAMQTSTAIPSP-MAMQTSTAIPS 277
>SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)
Length = 774
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 247 RAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTLY 366
R I+Y+ N+Y K ++ Y E A +Y D LY
Sbjct: 302 RGGISYIANRYSKANNKYMESYDETAPSKYFMYLDANNLY 341
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,437,282
Number of Sequences: 59808
Number of extensions: 324942
Number of successful extensions: 1113
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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