Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O14
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.78 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.78 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 263  TWSTSTVKAAASTQKTL-ERGRSSISACTLTLVPSTRDSEITSI 391
            T STS+  +  S QK+L  RGRSS S+   TL+P    +E T +
Sbjct: 1822 TSSTSSDISPMSEQKSLPRRGRSSRSSLR-TLLPPISVAETTFV 1864


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 263  TWSTSTVKAAASTQKTL-ERGRSSISACTLTLVPSTRDSEITSI 391
            T STS+  +  S QK+L  RGRSS S+   TL+P    +E T +
Sbjct: 1818 TSSTSSDISPMSEQKSLPRRGRSSRSSLR-TLLPPISVAETTFV 1860


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 554 RPISTSKNTLTLKGGMKQSE 613
           RP+  +  TLT++ G+K S+
Sbjct: 50  RPVMNNTETLTVQLGLKLSQ 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,260
Number of Sequences: 438
Number of extensions: 2637
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)